Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0276 ATGGATTGTTCCAACTTGAATATGAGCAATTCATACCCTGAAGATTACGAAGGAGTAACTGTTGCCGGATTTGAAGTTCCGAAGTCTCCCGATTCAAGTTATAACAACAACGTGTATCCTGGAAATGAAGAGGACGCTCGTGATCCACCCACAGTTCCTCCGCATTTGCAGCATACCTTGCTCCATTATCCTGCTAGTAGAAGCAATTCAGGGACTCTTCCCCTGCCTCACGACGTGATTCTCAATCATCTTTATATTGAGAACAGAGAGGCTCCAAGATCTGTGGTGGCACTAGGATTCACTCATCGCTTCCTATCAAAATATGTTACTGTTGTGCTCTACAAACCAGTCCAAAGAGGCAGTACTACAAGCATGTAA 378 0.4418 MDCSNLNMSNSYPEDYEGVTVAGFEVPKSPDSSYNNNVYPGNEEDARDPPTVPPHLQHTLLHYPASRSNSGTLPLPHDVILNHLYIENREAPRSVVALGFTHRFLSKYVTVVLYKPVQRGSTTSM 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0276 125 SMART AMPKBI_2 27 117 IPR006828 GO:0005515
Lele29g0276 125 MobiDBLite consensus disorder prediction 27 55 - -
Lele29g0276 125 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 47 116 IPR006828 GO:0005515
Lele29g0276 125 Gene3D - 21 117 - -
Lele29g0276 125 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 7 119 IPR043554 -
Lele29g0276 125 SUPERFAMILY AMPKBI-like 21 117 IPR037256 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0276 Lele-ChrLele29 1646074 1646536 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0276 29 1646074 1646536 Lele31g1274 31 18893217 18893680 hybridization
Lele29g0276 29 1646074 1646536 Lele32g0259 32 1623084 1623544 hybridization