Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0153 ATGTCCTGCGCACAAAGCACTAATGATTCGGAGACCCCACTCTTTGTTTGCAGTTCCACAGTTGTTTCGCAGGTTTCTGACTTTTCCAAAAGACAAATCCACCCTTCCCGCTTTTGCTCTATCTATTCGTTCACAGTTGTATCCGGTAATGAACTTGAAAGAGCGAGGGCAATCCCGTCATTTGAAATCTCGCCCAGCGAAAAGCCCAAAACAGCGCACCAAACCCTCCCCTCCGACCACCCACGCCCCCCAATAATGGCTTCTTCTTTCTCGACACGCTGCCTCTCAATGGCCATCGCTTCCTTCTTCATCCTCGCCACTGTTGCTGACGCCACTATCTTAACCCTCGTCAACAACTGCAAATTCACCGTCTGGCCCGCCATCCAACCCAACGTTGGTCACCCCGTCCTCGCTCGCGGCGGCTTCGCTCTCCTTTCCCTCACTCACACCTCCATCCCTGTACCTGACAAACACTGGTCGGGTCGCGTTTGGGCACGAACAGGCTGTGGCTACTCCGGCAACCAGTTCCTCTGCGCTACCGGCGACTGCGGCGGTCGCCTCGAGTGCAACGGTGCCGGCGGCGCACCTCCGGCATCTCTGGCTCAATTCAGCATCCACCACGGTGCCAACGACTACTCCTCCTACGGCGTCAGCTTCGTGGACGGCTTCAACGTCCCCATGACAGTGACCCCACACGAGGGTAAAGGCGTGTGTCCGGTGGTGGGTTGTCGCGTGGATCTGCTTGCAACTTGTCCTCCGGCGTTGCAGCACCGTGTACCACAGGTTCATGGTCCGGTGATGGCTTGCAAGAGTGGGTGCGAGGCTTTTAGGACGGACGAGCTGTGCTGCAGGAACCACTACAACAGCCCACAAATGTGTAAGCCTTCGATTTACTCAGAGTTCTTCAAGCATGCGTGTCCGGCGACCTTCACTTACGCTCATGATAACCCTTCTCTAATGCACGAGTGTTCTTCCCCAAGAGAGCTCAAGGTGATATTCTGCCATTAG 1008 0.5575 MSCAQSTNDSETPLFVCSSTVVSQVSDFSKRQIHPSRFCSIYSFTVVSGNELERARAIPSFEISPSEKPKTAHQTLPSDHPRPPIMASSFSTRCLSMAIASFFILATVADATILTLVNNCKFTVWPAIQPNVGHPVLARGGFALLSLTHTSIPVPDKHWSGRVWARTGCGYSGNQFLCATGDCGGRLECNGAGGAPPASLAQFSIHHGANDYSSYGVSFVDGFNVPMTVTPHEGKGVCPVVGCRVDLLATCPPALQHRVPQVHGPVMACKSGCEAFRTDELCCRNHYNSPQMCKPSIYSEFFKHACPATFTYAHDNPSLMHECSSPRELKVIFCH 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0153 335 Pfam Thaumatin family 118 334 IPR001938 -
Lele29g0153 335 PRINTS Pathogenesis-related protein signature 113 125 IPR001938 -
Lele29g0153 335 PRINTS Pathogenesis-related protein signature 162 173 IPR001938 -
Lele29g0153 335 PRINTS Pathogenesis-related protein signature 325 334 IPR001938 -
Lele29g0153 335 PRINTS Pathogenesis-related protein signature 174 203 IPR001938 -
Lele29g0153 335 Gene3D Thaumatin 112 334 IPR037176 -
Lele29g0153 335 CDD TLP-PA 113 334 - -
Lele29g0153 335 ProSiteProfiles Thaumatin family profile. 111 335 IPR001938 -
Lele29g0153 335 PANTHER OS03G0233200 PROTEIN 101 334 IPR001938 -
Lele29g0153 335 SMART tha2 114 335 IPR001938 -
Lele29g0153 335 FunFam Osmotin-like protein 113 334 - -
Lele29g0153 335 SUPERFAMILY Osmotin, thaumatin-like protein 113 334 IPR037176 -
Lele29g0153 335 MobiDBLite consensus disorder prediction 63 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0153 Lele-ChrLele29 845156 846231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0153 86 334 Receptor kinase-like Gene Family AT5G38280 35.573 1.38e-44 160
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0153 29 845156 846231 Lele32g0143 32 818208 818663 hybridization