Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele29g0067 ATGTCGTGTGGTCAGCGTGTATGGATGAAGGCGAGCATGAGAAGGTGCCTAGTGGTCACCGTGTCTGGGATGGAAAACCCCAGAAGTGAAAAGGACGATGAGCACAGAGAGTTGCAAGTGTCACGAGACGATCAAAGGATTCGTGCACAGAGCAGAGGAGGAGAATCAAGAGGTGAAGTACGAGGCGGAGTTAGAAGTGGGAAGCGACTTCGGAGAGATAGGGGCGTTGATGGTGGAGAACGAACACCACAAGGAGCTTTTCGTGAAGGAGGTGCTCCTGCAGGGCTTCGAGGGCGGTCCCCTCCGCTTTTCCTGCAACTCGTGGGTCCACTCCAATCGTACTTGCCATCGGAGACGCCGGAGGGGATAAAGAGTATCAGGGAGGAGGAGTTGAAGGTTTTGCGGGGGAACGGCGTCGGAGAGAGGAAGAGCTACGAGAGAGTGTACGATTACGACGTGTACAACGACCTTGGAGATCCGGACAGCAAGGGGGAACTCAAGAGGCCAGTTCTGGGTGGCCACCAGTATCCTTATCCGAGGCGTTGTCGGACCGGCCGTCCCTGCTGTCAAAAAGATCCGTTATCAGAGCAGAGAAGTAGCACCGTTTATGTGCCGAGAGACGAAGCGTTCTCAGAAGTGAAGCAGCTAACGTTTTCCACGAAGACGGTGTACTCGGTGTTACACGCCCTGGTCCCTGCCCTCCAGACCACCATGCTTGACGGCACTCTTGGCTTTCCTCTGTTCTCATCCATTGACTCTCTTTTCAACGAAGGCATTGACCTGCCTCCTCTTAAAAACCAAGGCTTTCTCAGGACCCTTTTGCCTCGCCTCGTCAAGTTTGTCAATGACGCCGAACAGGACATTCTACGTTTTGAGACGCCCCCCACCATGCACAGAGACAGGTTCTTTTGGTTCAGGGATGAGGAATTCGCGAGGCAAACTCTTGCAGGTCTCAACCCATGCAGCATTCAATTGGTTACGGAGTGGCCATTGAAAAGTGCATTAGATCCAAACATCTATGGCCCACAAGAATCAGCAATAACCACGGAAAATGTTGAGAAAGAAATAAGAGGTTTTGCAACCATTGAAGAGGCCATACAACAGAGGAAGTTGTTCATCCTAGACTACCATGATCTGCTGCTCCCATACGTGGCGAAGGTTAGGCAGCTTGAAGGGACAACCCTGTATGGCTCGAGGACATTGTTCTTCCTAACCCCAGACAACACATTGAGGCCTTTGGCCATCGAGCTCACTCGCCCACCTATAGACGGCAAGCCGCATTGGAGACAAGTTTTCGCACCCGCCTGGCACTCTACCGGTATTTGGCTCTGGAGGCTCGCCAAAGCCCACGTCCTTGCCCATGACTCCGGCTACCATCAACTCGTCAGTCACTGGGGATTGGCGGTGGAGGACCCCAGTGCTCCCCACGGGTTGAAGCTGACTATCGAGGACTACCCTTATGCCACCGACGGCCTCGTGCTTTGGGACGCCATCAAACAGTGGGTTACCGACTATGTAAACCGTTACTACACGGACCCGAGTATGGTGGAATCGGACTCAGAGCTCCAGGCTTGGTGGGAAGAGATCCGAACCAAAGGCCATGCGGATAAAAAGAACGAGCCTTGGTGGCCGGTTCTTAAAACGCCCAAGGATCTCGTCGAGATCTTGACCACTGTTGTGTGGATCACGTCGGGTCACCACGCGGCGGTTAATTTCGGGCAGTACGCGTATGCCGGGTATTTCCCGAACCGGCCCACCGTTGCGAGAACTAATGTGCCCACGGAGGACCCGACCGACACGGAATGGGAACTTTTCTGGAACAAACCGGAAGTTTCACTGTTGAAGTGCTTTCCTTCGCAAGTTCAGGCGACGACGGTGATGTCTGTGCTGGACATTCTTTCGAGTCACTCGCCGGACGAGGAATATCTGGGGAGCCATATGGAGCCGTCTTGGGAGGAGGATCCGATAGTGAAAGCTGCGTTCGAGCAGTTCGAAGGGCGGTTGAAAGAGCTGGAAGGGTTGATCGATTTGAGGAACGCAGATCCAAATCTGAGGAACCGAAATGGCGCTGGGATTGTACCGTATGAGCTTTTGAAGCCGTTTTCTGAAGAACCAGGAGTTACTGGGAAGGGAGTTCCATACAGTATCTCCATTTGA 2157 0.5336 MSCGQRVWMKASMRRCLVVTVSGMENPRSEKDDEHRELQVSRDDQRIRAQSRGGESRGEVRGGVRSGKRLRRDRGVDGGERTPQGAFREGGAPAGLRGRSPPLFLQLVGPLQSYLPSETPEGIKSIREEELKVLRGNGVGERKSYERVYDYDVYNDLGDPDSKGELKRPVLGGHQYPYPRRCRTGRPCCQKDPLSEQRSSTVYVPRDEAFSEVKQLTFSTKTVYSVLHALVPALQTTMLDGTLGFPLFSSIDSLFNEGIDLPPLKNQGFLRTLLPRLVKFVNDAEQDILRFETPPTMHRDRFFWFRDEEFARQTLAGLNPCSIQLVTEWPLKSALDPNIYGPQESAITTENVEKEIRGFATIEEAIQQRKLFILDYHDLLLPYVAKVRQLEGTTLYGSRTLFFLTPDNTLRPLAIELTRPPIDGKPHWRQVFAPAWHSTGIWLWRLAKAHVLAHDSGYHQLVSHWGLAVEDPSAPHGLKLTIEDYPYATDGLVLWDAIKQWVTDYVNRYYTDPSMVESDSELQAWWEEIRTKGHADKKNEPWWPVLKTPKDLVEILTTVVWITSGHHAAVNFGQYAYAGYFPNRPTVARTNVPTEDPTDTEWELFWNKPEVSLLKCFPSQVQATTVMSVLDILSSHSPDEEYLGSHMEPSWEEDPIVKAAFEQFEGRLKELEGLIDLRNADPNLRNRNGAGIVPYELLKPFSEEPGVTGKGVPYSISI 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele29g0067 718 PANTHER LIPOXYGENASE 113 466 IPR000907 GO:0016702|GO:0034440|GO:0046872
Lele29g0067 718 MobiDBLite consensus disorder prediction 26 79 - -
Lele29g0067 718 Gene3D - 321 455 - -
Lele29g0067 718 Gene3D - 233 320 IPR027433 -
Lele29g0067 718 PRINTS Plant lipoxygenase signature 177 196 IPR001246 GO:0016491
Lele29g0067 718 PRINTS Plant lipoxygenase signature 328 347 IPR001246 GO:0016491
Lele29g0067 718 PRINTS Plant lipoxygenase signature 106 127 IPR001246 GO:0016491
Lele29g0067 718 PRINTS Plant lipoxygenase signature 242 263 IPR001246 GO:0016491
Lele29g0067 718 PRINTS Plant lipoxygenase signature 396 420 IPR001246 GO:0016491
Lele29g0067 718 PRINTS Plant lipoxygenase signature 289 305 IPR001246 GO:0016491
Lele29g0067 718 PRINTS Plant lipoxygenase signature 145 161 IPR001246 GO:0016491
Lele29g0067 718 MobiDBLite consensus disorder prediction 26 98 - -
Lele29g0067 718 Gene3D - 115 213 - -
Lele29g0067 718 Gene3D - 466 717 - -
Lele29g0067 718 Pfam Lipoxygenase 123 465 IPR013819 GO:0016702|GO:0046872
Lele29g0067 718 Pfam Lipoxygenase 466 700 IPR013819 GO:0016702|GO:0046872
Lele29g0067 718 FunFam Lipoxygenase 321 455 - -
Lele29g0067 718 SUPERFAMILY Lipoxigenase 115 718 IPR036226 -
Lele29g0067 718 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 113 718 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele29g0067 Lele-ChrLele29 393765 397817 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele29g0067 466 718 Acyl Lipid Metabolism Gene Families AT3G45140 64.032 3.11e-110 349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele29g0067 29 393765 397817 Lele31g1480 31 20151042 20169683 hybridization
Lele29g0067 29 393765 397817 Lele32g0070 32 402827 409621 hybridization