Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1539 ATGTGTAGCTCACGCTCTCTCTCTCCTCTGCTCACTCTGTTTCTTCTTCACTCGGTGGTAGCTCTGGTCTCTGCTCAGGGATCTACCAGAACCACATGGAAGACACTAAACGGTGATGCACCATCAGTCATAGCACGTGGGGGATTTTCGGGGATATTTCCTGATTCCAGCCAAGGTGCTTACAATTTGGCACTAATAACCAGCGTACGGAATGTCATTTCATGGTGTGACGTGCAATTAACAAAAGATGGAGCTGGGATTTGTCTTCCAGATGTCAAACTTGACAACGCTACTGACATTTCATACCGTCTTCTAAATAAATCCACCACTTACTTAGTTAATGGTGTACCAACCCGTGGATATTTTTCAGTGGATTACTCGATGAAGAATCTATCTCAAGTTTTTTTGACTCAGGGAGTCTATTCTCGAACTAACAAGTTTGACGGTATTGGATTTCTAATTCTTACTGTTGAGGAACTCGTTAAACAAGTTGCACCACCAATCTTGTGGTTGAACATTCAGCATGATATGTTCTACTCGCAACACAATCTGAGTATGAGAAACTTTGTACTTTCTGTTTCTAGAAAAGTAATCATCAAATATATCTCATCCCCTGAGGTGAATTTCCTGAGAGATATAGCGGCACGCTTTAACCCAAACATAACTAAACTGGTCTTCAGATTTATGGGAAAGGATGACACAGAACCATCAACCAATCAGACTTATGACTCACTTCAAAAAAATCTTACATTTATCAAGACTTTTGCTTCTGGAATTATGGTTCCCAAGAGTTACATATGGCCTGCAGATGGTGGTTATCTACAGCCACATACAACTTTGGTCTCAGATGCTCACAAAGCAGGACTGGAAGTTTTTGCATCAGATTTTACAAATGATGTTCCAATTAGCTATAATTACAGTTATGATCCTCTTGCTGAGTACCTCCAGTTCATTGATAACGGTGACTTCTCTGTTGATGGTGTGCTGTCTGACTTTCCTATAACGCCGTCTGAAGCTGTGGGTTGCTTTGCTCAACTAGGTGCAAATGCTTCAAAAGCAGTTAACATTTCGGTTATCTCAAAATTTGGGGCAAGTGGAGACTATCCTCCTTGTACTGACTGGGCATACAACAAGGCCATATCAGATGGTGTGGATGTTCTGGATTGTCCTGTTCAACTGTCAAAAGATGGAATACCATTTTGCCTAAGCTCCATAGATCTCATACAGAGCTCAACAGTTGCTCAATCAAATTTCAGCAGACTAGCCACATCTGTTCCTGATATCAAGAATGGCAGTGGCATATTTTCATTCAGTTTGAAATCGTATGAGATTAGTACCTTGACCCCCTCAATATTGAACCCATATGCAAAATACACATTGTTCAGGAATCCAAAAAATAAGAACGCGGGGAAGTTTATGACATTAGCAGATTTCTTGTCCTTGGCAAAAAATCAGACTTCTCTGTCTGGTGTCTTGATCACTGTTGAGCATGCAGCCTATCTTGCAGGGAAGGTAGGACTAAATGCGATTGATGCAGTCCTTACTGCTTTGAGCAAAGCTGGTTATGATAAGGCAGGGGCACAAAAAGTTTTGATTCAGTCCTCTGATAGCTCTGTACTAAAAGAATTCAAGGATAAATCTAAATATGAGCTTGTCTATAACATAGATAAGGATTTCGGTGATGCTGACAATGCAGTTGTTGAAGAGATCAAAGGATTTGCAGATTCCGTGGTTGTTGCAAAGTCATCTGTTTTTCCTGAGAACTCTGCCTTCCTGACTGGCTTTACCAAAATTGTGCCAAAGCTAAAATCTTCTAACCTCGCCGTCTATGTAGAAACATTTGACAATGAGTTTGTATCACAGGCCTGGGATTTCTTCTCTGATGGAACTGTGGAGATAAACTCATTTGTCCAGGAAGCCGGTATTGATGGTGTCATCACAGCCTTCCCAAAGACCGCTAATAGATACAGTAGGACTCCTTGTTTGAAAGCTAAAGTTACACCTCCTTACATGCAACCCGTCAAAGCTGGTGATCTTTTACAACTTGTTACCAAAGATTACCTGCCACCGGCTGAGGCTCCTCTCCCGCCACTGACAGAATCTGAAGTGTCAGAGTCACCTTTGCCTCCCGTTACAAATGCAAGAGCCAAGGCTCCTGCCCCTGCCTCTGGAACGGGGACTCCACTCGGCAGCGCACAGTCAAAGGTTAACATCTGCTTCTTTTTGTCCACTCTAGCTATGCTGGTATCTTTCCTTCTGCTCCTTTAA 2268 0.422 MCSSRSLSPLLTLFLLHSVVALVSAQGSTRTTWKTLNGDAPSVIARGGFSGIFPDSSQGAYNLALITSVRNVISWCDVQLTKDGAGICLPDVKLDNATDISYRLLNKSTTYLVNGVPTRGYFSVDYSMKNLSQVFLTQGVYSRTNKFDGIGFLILTVEELVKQVAPPILWLNIQHDMFYSQHNLSMRNFVLSVSRKVIIKYISSPEVNFLRDIAARFNPNITKLVFRFMGKDDTEPSTNQTYDSLQKNLTFIKTFASGIMVPKSYIWPADGGYLQPHTTLVSDAHKAGLEVFASDFTNDVPISYNYSYDPLAEYLQFIDNGDFSVDGVLSDFPITPSEAVGCFAQLGANASKAVNISVISKFGASGDYPPCTDWAYNKAISDGVDVLDCPVQLSKDGIPFCLSSIDLIQSSTVAQSNFSRLATSVPDIKNGSGIFSFSLKSYEISTLTPSILNPYAKYTLFRNPKNKNAGKFMTLADFLSLAKNQTSLSGVLITVEHAAYLAGKVGLNAIDAVLTALSKAGYDKAGAQKVLIQSSDSSVLKEFKDKSKYELVYNIDKDFGDADNAVVEEIKGFADSVVVAKSSVFPENSAFLTGFTKIVPKLKSSNLAVYVETFDNEFVSQAWDFFSDGTVEINSFVQEAGIDGVITAFPKTANRYSRTPCLKAKVTPPYMQPVKAGDLLQLVTKDYLPPAEAPLPPLTESEVSESPLPPVTNARAKAPAPASGTGTPLGSAQSKVNICFFLSTLAMLVSFLLLL 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1539 755 ProSiteProfiles GP-PDE domain profile. 356 657 IPR030395 GO:0006629|GO:0008081
Lele28g1539 755 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 39 339 - -
Lele28g1539 755 SUPERFAMILY PLC-like phosphodiesterases 358 656 IPR017946 GO:0006629|GO:0008081
Lele28g1539 755 MobiDBLite consensus disorder prediction 694 730 - -
Lele28g1539 755 SUPERFAMILY PLC-like phosphodiesterases 40 338 IPR017946 GO:0006629|GO:0008081
Lele28g1539 755 Gene3D Phosphatidylinositol (PI) phosphodiesterase 357 656 IPR017946 GO:0006629|GO:0008081
Lele28g1539 755 Gene3D Phosphatidylinositol (PI) phosphodiesterase 40 339 IPR017946 GO:0006629|GO:0008081
Lele28g1539 755 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 354 657 - -
Lele28g1539 755 CDD GDPD_SHV3_repeat_2 358 656 - -
Lele28g1539 755 ProSiteProfiles GP-PDE domain profile. 41 340 IPR030395 GO:0006629|GO:0008081
Lele28g1539 755 CDD GDPD_SHV3_repeat_1 41 339 - -
Lele28g1539 755 Pfam Glycerophosphoryl diester phosphodiesterase family 363 651 IPR030395 GO:0006629|GO:0008081
Lele28g1539 755 Pfam Glycerophosphoryl diester phosphodiesterase family 76 334 IPR030395 GO:0006629|GO:0008081
Lele28g1539 755 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 12 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1539 Lele-ChrLele28 12440140 12447329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g1539 10 755 Receptor kinase-like Gene Family AT4G26690 54.847 0.0 827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1524 25 11924502 11931463 Lele28g1539 28 12440140 12447329 hybridization
Lele26g1545 26 11770199 11777586 Lele28g1539 28 12440140 12447329 hybridization