Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1310 ATGTCTCTGCTTACAGATCTCATCAACCTTAACCTCTCGGAGACCACCGAGAAGGTGATCGCTGAGTACATATGGATCGGTGGATCTGGGATGGACCTCAGGAGCAAAGCAAGGACTCTCCCAAGACCAGTTAATGATCCTTCCAAGTTGCCCAAGTGGAATTATGACGGTTCTAGCACTGGTCAAGCTCCTGGAGAAGACAGTGAGGTTATCTTATACCCACAAGCAATTTTCAGAGATCCATTCAGAAGGGGTAACAATATCTTGGTTATATGTGATGCATACACTCCTGCTGGAGAACCTATTCCCACAAACAAGAGACACTCTGCTGCAAAAATATTTAGCCATCCTGATGTTGTTGCCGAAGAACCTTGGTATGGAATTGAGCAGGAATACACCTTGTTGCAGAAAGATGTAAACTGGCCTCTTGGATGGCCTGTTGGTGGCTTTCCTGGTCCTCAGGGACCATACTATTGTGGTGCTGGTGCTGACAAGGCTTTTGGTCGTGACATTGTGGATGCACATTACAAAGCCTGTCTATATGCTGGCATCAACATCAGTGGTATTAATGGAGAAGTCATGCCTGGTCAATGGGAATTCCAAGTTGGTCCTGCAGTTGGTATCTCTGCCGGTGACGAATTGTGGTGTTCTCGTTACATCTTGGAGAGGATCTGTGAGATTGCTGGTGTGGTGGTTTCCTTTGACCCCAAGCCAATTCCGGGTGACTGGAATGGAGCTGGTGCTCACACAAATTACAGTACCAAGTCCATGAGAGATGATGGAGGATATGAAGTCATCAAGAAGGCAATCGAGAAGTTGGGCACGAAGCACAAGGAGCACATCGCTGCATATGGTGAAGGTAACGAACGTCGTCTCACAGGAAAGCACGAGACTGCCAACATTGAAACCTTCTTATGGGGTGTTGCAAACCGTGGTGCATCAATTAGAGTTGGAAGGGACACAGAGAAAGCAGGAAAGGGTTACTTTGAGGACAGGAGGCCAGCTTCTAACATGGACCCATATGTGGTCACTTCCATGATTGCAGACACCACCATTCTCTGGAAACCATGA 1071 0.4734 MSLLTDLINLNLSETTEKVIAEYIWIGGSGMDLRSKARTLPRPVNDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRRGNNILVICDAYTPAGEPIPTNKRHSAAKIFSHPDVVAEEPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWCSRYILERICEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRDDGGYEVIKKAIEKLGTKHKEHIAAYGEGNERRLTGKHETANIETFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1310 356 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 237 253 IPR027303 -
Lele28g1310 356 MobiDBLite consensus disorder prediction 37 66 - -
Lele28g1310 356 Gene3D - 1 103 IPR036651 GO:0004356|GO:0006542|GO:0006807
Lele28g1310 356 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 104 356 - -
Lele28g1310 356 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 106 356 IPR008146 GO:0004356|GO:0006807
Lele28g1310 356 Pfam Glutamine synthetase, beta-Grasp domain 22 97 IPR008147 GO:0004356|GO:0006542|GO:0006807
Lele28g1310 356 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 19 99 IPR008147 GO:0004356|GO:0006542|GO:0006807
Lele28g1310 356 SUPERFAMILY Glutamine synthetase/guanido kinase 103 351 IPR014746 GO:0003824
Lele28g1310 356 PANTHER GLUTAMINE SYNTHETASE 4 354 - -
Lele28g1310 356 SMART Gln_synt_C_2 103 351 IPR008146 GO:0004356|GO:0006807
Lele28g1310 356 Pfam Glutamine synthetase, catalytic domain 151 345 IPR008146 GO:0004356|GO:0006807
Lele28g1310 356 ProSitePatterns Glutamine synthetase signature 1. 55 72 IPR027302 -
Lele28g1310 356 SUPERFAMILY Glutamine synthetase, N-terminal domain 13 102 IPR036651 GO:0004356|GO:0006542|GO:0006807
Lele28g1310 356 FunFam Glutamine synthetase, chloroplastic 1 103 - -
Lele28g1310 356 FunFam Glutamine synthetase 104 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1310 Lele-ChrLele28 8873636 8876542 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1312 25 8950859 8953873 Lele28g1310 28 8873636 8876542 CCT
Lele25g1312 25 8950859 8953873 Lele28g1310 28 8873636 8876542 hybridization
Lele26g1318 26 8896290 8899194 Lele28g1310 28 8873636 8876542 hybridization