Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1312 ATGTCTCTGCTTACAGATCTCATCAACCTTAACCTTTTGGAGACCACGGAGAAGGTGATCGCTGAGTACATATGGATCGGTGGATCTGGTATGGACCTGAGGAGCAAAGCAAGGACTCTCCCAGGACCAGTTAGTGATCCTTCAAAGTTGCCTAAGTGGAATTACGATGGTTCTAGCACTGGTCAAGCTCCTGGAGAAGACAGTGAAGTTATCTTATACCCACAAGCAATTTTCAGAGATCCATTCAGAAGGGGTAACAATATCTTGGTTATATGTGATGCATACACTCCTGCTGGAGAACCTATTCCCACAAACAAGAGACACTCTGCGGCAAAAATATTTAGCCACCCTGATGTTGTTGCCGAAGAACCTTGGTATGGAATTGAGCAGGAATACACCTTGTTGCAGAAAGATGTAAACTGGCCTCTTGGATGGCCTGTTGGTGGCTTTCCTGGTCCTCAGGGACCATACTATTGTGGAGCTGGTGCAGACAAGGCATTTGGCCGTGACATTGTGGATGCACATTACAAAGCTTGCCTATATGCTGGCATCAACATCAGTGGTATCAATGGAGAAGTCATGCCTGGCCAATGGGAATTCCAAGTTGGTCCTGCAGTTGGTATCTCTGCTGGTGATGAATTGTGGTGTTCTCGTTACATCTTGGAGAGGATCTGTGAGATTGCTGGTGTGGTGGTTTCCTTTGACCCCAAGCCAATTCCGGGTGACTGGAACGGAGCTGGTGCTCACACAAATTACAGTACCAAGTCCATGAGAAATGATGGAGGGTATGAACTCATCAAGAAGGCAATCGAGAAGTTGGGCAAGAAGCACAAAGAGCACATCGCTGCATATGGTGAAGGCAACGAACGTCGTCTCACAGGAAAACATGAGACTGCCAACATCGAAACCTTCTTATGGGGTGTGGCAAACCGGGGAGCATCAATTAGAGTTGGGAGGGACACAGAGAAAGCTGGAAAGGGTTACTTTGAGGACAGGAGGCCAGCTTCTAACATGGACCCATATGTGGTCACTTCCATGATTGCAGACACCACCATTCTCTGGAAACCATGA 1071 0.4743 MSLLTDLINLNLLETTEKVIAEYIWIGGSGMDLRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRRGNNILVICDAYTPAGEPIPTNKRHSAAKIFSHPDVVAEEPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWCSRYILERICEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRNDGGYELIKKAIEKLGKKHKEHIAAYGEGNERRLTGKHETANIETFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1312 356 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 237 253 IPR027303 -
Lele25g1312 356 MobiDBLite consensus disorder prediction 37 66 - -
Lele25g1312 356 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 19 99 IPR008147 GO:0004356|GO:0006542|GO:0006807
Lele25g1312 356 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 104 356 - -
Lele25g1312 356 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 106 356 IPR008146 GO:0004356|GO:0006807
Lele25g1312 356 FunFam Glutamine synthetase 104 356 - -
Lele25g1312 356 PANTHER GLUTAMINE SYNTHETASE 4 354 - -
Lele25g1312 356 Pfam Glutamine synthetase, beta-Grasp domain 22 97 IPR008147 GO:0004356|GO:0006542|GO:0006807
Lele25g1312 356 Gene3D - 1 103 IPR036651 GO:0004356|GO:0006542|GO:0006807
Lele25g1312 356 FunFam Glutamine synthetase, chloroplastic 1 103 - -
Lele25g1312 356 ProSitePatterns Glutamine synthetase signature 1. 55 72 IPR027302 -
Lele25g1312 356 SUPERFAMILY Glutamine synthetase/guanido kinase 103 351 IPR014746 GO:0003824
Lele25g1312 356 SMART Gln_synt_C_2 103 351 IPR008146 GO:0004356|GO:0006807
Lele25g1312 356 SUPERFAMILY Glutamine synthetase, N-terminal domain 11 102 IPR036651 GO:0004356|GO:0006542|GO:0006807
Lele25g1312 356 Pfam Glutamine synthetase, catalytic domain 151 345 IPR008146 GO:0004356|GO:0006807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1312 Lele-ChrLele25 8950859 8953873 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1312 25 8950859 8953873 Lele25g1312 25 8950859 8953873 CCT
Lele25g1312 25 8950859 8953873 Lele26g1318 26 8896290 8899194 CCT
Lele25g1312 25 8950859 8953873 Lele27g0776 27 15823525 15826555 CCT
Lele25g1312 25 8950859 8953873 Lele28g1310 28 8873636 8876542 CCT
Lele25g1312 25 8950859 8953873 Lele27g0776 27 15823525 15826555 hybridization
Lele25g1312 25 8950859 8953873 Lele28g1310 28 8873636 8876542 hybridization