Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g1281 ATGATGGAGATAAGTACAGCCAGGTGTTGTCTGGACTCCCAGCCACAGGCAATATTGTTTTCAAGAATTTCAAGAACATCAGGATGGGAAAGCACTCATAGAATTTCTTATAATATAACTTCCCAGAGATCAAGGTTGGGCTATCGAGGCTTGGCCTCTTCCTACCCAATCTTTAATGCAGTATATCCAAATAGGCCGGTTTTCCGTAGAGCACATTCTATGGCAACCAGTTTGGATGAGTTTACATCGCTACAGTCTGAAGGCGATTCTGATGAAGATGAGGATGCATCTGAAGACTTGAAGGAGAATATTTTGGAACAACCACTGACAAGTGAACAGATAGCAGCACTACTTGCTGATACTGAAAGAGCCAGGCTTACAAAGAAGCTTAGTGAAGCCAACCAGCATAATCGGTTCCTCAAAAGACAGTTGCAAATAAAGGAGGAATCATTGGTTAACTTCAAAAGTGAGCTTGCTGTCATGGAGCTTGAAGTTCAGGCTTTGGTCAAACTTGCTGAAGAAATAGCTCAGTCTGCTATTCCAGAAGGTTCAAGGAAGATCAATGGAAAATATATCCAATCTCACCTTGTTTCTCGTTTAGAAGCTATGAATGAGAAATTAAAGGAACAGATAAAGGACGTAGATTCAGTTCAATCCAAGGAGGTTCCTGTATTCTGGGTTGGCATGGCTGAGAGCGTGCAAGTAATGGGCAGCTTTGATGGTTGGAGCCAAGGAGAGTACCTATCACCAGAATATGATGGTTCTTATACAAAGTTCTCTTCAACATTGATGCTCAGACCAGGAAGGTATGAGATCAAGTTCTTAGTGGATGGTGAATGGAAGCTTTCACCGGAGTTTCCCACTGTTGGCGAGGGATTAACCAAAAACAATCTGTTAGTTGTGTAA 906 0.4205 MMEISTARCCLDSQPQAILFSRISRTSGWESTHRISYNITSQRSRLGYRGLASSYPIFNAVYPNRPVFRRAHSMATSLDEFTSLQSEGDSDEDEDASEDLKENILEQPLTSEQIAALLADTERARLTKKLSEANQHNRFLKRQLQIKEESLVNFKSELAVMELEVQALVKLAEEIAQSAIPEGSRKINGKYIQSHLVSRLEAMNEKLKEQIKDVDSVQSKEVPVFWVGMAESVQVMGSFDGWSQGEYLSPEYDGSYTKFSSTLMLRPGRYEIKFLVDGEWKLSPEFPTVGEGLTKNNLLVV 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g1281 301 Pfam Glycogen recognition site of AMP-activated protein kinase 225 292 IPR032640 -
Lele28g1281 301 PANTHER PROTEIN PTST, CHLOROPLASTIC 5 301 - -
Lele28g1281 301 SUPERFAMILY E set domains 222 300 IPR014756 -
Lele28g1281 301 Coils Coil 123 157 - -
Lele28g1281 301 Gene3D Immunoglobulins 212 301 IPR013783 -
Lele28g1281 301 Coils Coil 197 220 - -
Lele28g1281 301 CDD E_set_AMPKbeta_like_N 221 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g1281 Lele-ChrLele28 8567854 8576304 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g1281 28 8567854 8576304 Lele28g1281 28 8567854 8576304 ECH
Lele25g1280 25 8627201 8627784 Lele28g1281 28 8567854 8576304 hybridization
Lele26g1290 26 8538534 8541804 Lele28g1281 28 8567854 8576304 hybridization