Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0849 ATGGGCCAGGCTGCTTCCGCGGCCGCAGTTCCTTGCCGTCGCCAAACCAGTCACAGCCACCGCTCCACGTCCAAATCCAGATCAACGCTGTTCATTTCTCCTATGGTTTTCAATGAAAGCCACGAGTCCCCAGATGAGGTCATCCATGCTGTGCCTGACTACATCTCTGAGCTTCCCGACGAGTGTTTGGCTTGCATTTTTCAGTCATTAAGCTCCGCCGACCGTAACCGCTGTTCTCTCGTGTGCCGGCGGTGGTTCCAGGTCGAGGGACAGAGTCGTCACCGTCTCTCCCTTAACGCTCAATCGGATCTTCTCCCGGTTATCCCCTCTCTTTTCTCACGTTTCGATTCCGTCACGAAGCTCGCTTTGAAATGCGACCGTAGATCCGTTAGTATCGGGGATGAGGCGCTCGTTCTTGTCTCTCAACGATGCCCTAATCTGACTCGCCTGAAACTCCGTGCCTGCCGCGAACTTACGTATGCTGGCGTGGAGGTCTTTGCTAAGAATTGCAAGGGTTTGAAGAAACTTTCCTGTGGATCTTGCACTTTTGGAGCCCAAGGGATGAACGCAGTGCTCAATCATTGCGCCTCTATGGAAGAATTATCTGTCAAGCGTCTCCGGGGAATTACGGATGTAGCATCGGTGGAGTCTATTGGACCTGGTGTTGCAGCGTCATCTCTCAAAACTATTTGTTTAAAAGAGCTATATAATGGACAATGTTTTGGGCCACTTATTCTTGGCTCGAAGATTTTAAGGACTTTAAAGATTTTCAGGTGCTCTGGCGATTGGGATAGACTTTTTCAACTCCTAGCGGATCGAGCACCAAGTATAGTCGAAGTCCACCTTGAGAGGCTCCAGACAAGCGATGTTGGCTTAGAGGCAATCTCGAATTGCTCGAGTCTGGAAGTCTTGCATCTTGTCAAGACTCCAGAGTGCACAGATTTAGGGCTTAACGCGATTGCAGAACGATGTAGGCTCTTAAGGAAACTTCATATTGACGGGTGGAAGACGAATCGTATAGGAGATGAAGGTCTAAAAGCAGTCGCTAAGTATTGCCCATATCTTCAGGAATTGGTCCTTGTTGGTGTCAATCCCACTAATGCGAGTTTGGAAATGTTGGCATCCAATTGCCTGAATCTCGAGAGGTTGGCGTTATGTGGAAGTGAAACAGTTGGTGATGTTGAAATATCGTGCATTGCAACCAAGTGCTTGGCCTTGAAGAAACTCTGTATTAAGAGCTGCCCTGTGTCTGACCATGGTATGGAAGCACTGGCATCTGGTTGCCCGAATTTGCTGAAAGTAAAGGTTAAGAAGTGCAAGGGTGTGACCTCTGAGGGTACAGATTTGCTGAGGCTATGTAGGGAGTCGCTTGCTGTAAATTTAGACGCTGGTGAAAAAGAACATCAGGACGCAAGTGCTAGTGATGGTGGAGCTCAAGAAAATGGCATAGAAATTCCTTCAATCCCCAGCCAAGCAGCGGCCTCGGCCACCATTGCATCAAGCAGTAATGGGCGATCAAGTTCATTCAAGTCAAGGCTAGGACTTTTCTCTGGGAAATGCTACATCGTATGCACTTTGAGAAGATTGTCTGGTGGTAACCGTAGTTCCCGGCATAGTTAG 1620 0.4864 MGQAASAAAVPCRRQTSHSHRSTSKSRSTLFISPMVFNESHESPDEVIHAVPDYISELPDECLACIFQSLSSADRNRCSLVCRRWFQVEGQSRHRLSLNAQSDLLPVIPSLFSRFDSVTKLALKCDRRSVSIGDEALVLVSQRCPNLTRLKLRACRELTYAGVEVFAKNCKGLKKLSCGSCTFGAQGMNAVLNHCASMEELSVKRLRGITDVASVESIGPGVAASSLKTICLKELYNGQCFGPLILGSKILRTLKIFRCSGDWDRLFQLLADRAPSIVEVHLERLQTSDVGLEAISNCSSLEVLHLVKTPECTDLGLNAIAERCRLLRKLHIDGWKTNRIGDEGLKAVAKYCPYLQELVLVGVNPTNASLEMLASNCLNLERLALCGSETVGDVEISCIATKCLALKKLCIKSCPVSDHGMEALASGCPNLLKVKVKKCKGVTSEGTDLLRLCRESLAVNLDAGEKEHQDASASDGGAQENGIEIPSIPSQAAASATIASSSNGRSSSFKSRLGLFSGKCYIVCTLRRLSGGNRSSRHS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0849 539 ProSiteProfiles F-box domain profile. 52 88 IPR001810 GO:0005515
Lele28g0849 539 SUPERFAMILY F-box domain 40 88 IPR036047 GO:0005515
Lele28g0849 539 PANTHER UNCHARACTERIZED 57 462 - -
Lele28g0849 539 Gene3D Ribonuclease Inhibitor 213 481 IPR032675 -
Lele28g0849 539 MobiDBLite consensus disorder prediction 1 27 - -
Lele28g0849 539 FunFam F-box/LRR-repeat protein 3 isoform X1 54 94 - -
Lele28g0849 539 SMART fbox_2 58 98 IPR001810 GO:0005515
Lele28g0849 539 MobiDBLite consensus disorder prediction 10 27 - -
Lele28g0849 539 Pfam F-box 57 94 IPR041567 -
Lele28g0849 539 SUPERFAMILY RNI-like 102 458 - -
Lele28g0849 539 FunFam F-box protein SKIP2 90 471 - -
Lele28g0849 539 Gene3D - 53 93 - -
Lele28g0849 539 Gene3D Ribonuclease Inhibitor 106 212 IPR032675 -
Lele28g0849 539 SMART LRR_CC_2 324 351 IPR006553 -
Lele28g0849 539 SMART LRR_CC_2 377 402 IPR006553 -
Lele28g0849 539 SMART LRR_CC_2 144 169 IPR006553 -
Lele28g0849 539 SMART LRR_CC_2 170 194 IPR006553 -
Lele28g0849 539 SMART LRR_CC_2 298 323 IPR006553 -
Lele28g0849 539 SMART LRR_CC_2 195 221 IPR006553 -
Lele28g0849 539 SMART LRR_CC_2 403 427 IPR006553 -
Lele28g0849 539 SMART LRR_CC_2 352 376 IPR006553 -
Lele28g0849 539 SMART LRR_CC_2 428 452 IPR006553 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0849 Lele-ChrLele28 5459551 5461170 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0852 25 5476062 5477681 Lele28g0849 28 5459551 5461170 hybridization
Lele26g0868 26 5554978 5556531 Lele28g0849 28 5459551 5461170 hybridization