Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0436 ATGGCAGCTGTTTCCGATGAAGCCACTAATGTTTGTAGTCACTGCAATCGCACTATCCCTGCAGCAAATATTGATTTGCATTATGCTCATTGCTCCCGGAACCTTGAAAAATGCAAGGTTTGCGGTGATATGATTCCCAAAAAAATTGCTGAGGATCACTACTTAAGCACTCATGCTCCGGTCGTCTGTTCAATGTGCAGTGAGACGATGGACCGTGATAATTTAGATGTCCATAAAGGTGAAAATTGCCCTCAAAGAATTGTTACTTGTGAATTTTGCGAGTTCCCATTGCCAGCAATTGATCTGGCTGAGCATCAGGAAGTCTGTGGGAATCGAACAGAACTCTGTCATCTTTGTGACAAATATGTCAGATTACGTGAAAGATACAACCATGAAGCTAGCTGCAATGGCATCCCAGATCATGCTGCTACTGTAGGATCTTCAAGGGAGGTGAGGGAAGCGGAAAGAGAGGATAACGCTAGAAGAAGGCCGCGGAACAACTTCTCGAGAAGACGTCTTCTTTTCACAATAGCAATAACTAGCATTGCTGTCTTGTTAGGATCTCTGTTTTTCCAGAAGAAGACTGAGCGAAATCGTGTTTATCGGGCAAAGGCAAAAATGGCAACATTCGAACTGTACAGAAGGTCGACGATCGGAATGTGTCTCACCGATACTCTTGATGAGATGGTTCAGAACGGTACTCTCAGCCCTGAGCTTGCCATTCAGGTTCTTGTCCGGTTCGATAAGCTCTGGAAACGCAAGTCAAGAGAAAGGTTTCCATTAAGTTTTGAGCATATTCACAACTTCACTTCCTTTCCTTTGTGGAGATGCCCATTGGATGAAGAGGTTGTTTCTGTGCTCGATTACATTGGTTCAGGCACATTTTTAATAACTTTTTATCCTAAGGGACATCTACATACATACAGATTCTGCGACAATGTTTGGACCTTCATTTTGCATGATGTTTTGTTCAAGAGTGACGAGTGCCAAGAGAACATTGGAAGGGCAAAAATAGTGGCATGTGACTCAAGGGCACCAAAGAGGAGGTTGGAGGCCAAATTTTTTGTAGAAAAATATACCGTGGTACACATCGATTCTCAACCCCACCTCCTCTCCCCTCTGTTTCACTCCTCCTTGGAGTTCCGATTTGCCTCTCTTTCTCCCTCCCTCGCTTCCTATTCTATTCGCACTTTTGATGAGTTTGCATCAACCCCTTTCCCTGTTGTCTCTCAGCTCTGGGTATCGGTTTAA 1251 0.4404 MAAVSDEATNVCSHCNRTIPAANIDLHYAHCSRNLEKCKVCGDMIPKKIAEDHYLSTHAPVVCSMCSETMDRDNLDVHKGENCPQRIVTCEFCEFPLPAIDLAEHQEVCGNRTELCHLCDKYVRLRERYNHEASCNGIPDHAATVGSSREVREAEREDNARRRPRNNFSRRRLLFTIAITSIAVLLGSLFFQKKTERNRVYRAKAKMATFELYRRSTIGMCLTDTLDEMVQNGTLSPELAIQVLVRFDKLWKRKSRERFPLSFEHIHNFTSFPLWRCPLDEEVVSVLDYIGSGTFLITFYPKGHLHTYRFCDNVWTFILHDVLFKSDECQENIGRAKIVACDSRAPKRRLEAKFFVEKYTVVHIDSQPHLLSPLFHSSLEFRFASLSPSLASYSIRTFDEFASTPFPVVSQLWVSV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0436 416 SUPERFAMILY Transcription factor IIA (TFIIA), beta-barrel domain 302 344 IPR009088 GO:0005672|GO:0006367
Lele28g0436 416 CDD TFIIA_gamma_C 297 344 IPR015871 GO:0005672|GO:0006367
Lele28g0436 416 PANTHER TRAF-TYPE ZINC FINGER PROTEIN-RELATED 1 198 - -
Lele28g0436 416 CDD TFIIA_gamma_N 210 249 IPR015872 GO:0005672|GO:0006367
Lele28g0436 416 SUPERFAMILY Transcription factor IIA (TFIIA), alpha-helical domain 209 251 - -
Lele28g0436 416 Gene3D - 206 254 IPR009083 GO:0005672|GO:0006367
Lele28g0436 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 111 IPR013083 -
Lele28g0436 416 FunFam Transcription initiation factor IIA subunit 2 208 254 - -
Lele28g0436 416 Pfam Transcription initiation factor IIA, gamma subunit, helical domain 210 250 IPR015872 GO:0005672|GO:0006367
Lele28g0436 416 Gene3D - 298 350 IPR009088 GO:0005672|GO:0006367
Lele28g0436 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 57 IPR013083 -
Lele28g0436 416 Pfam Transcription initiation factor IIA, gamma subunit 302 343 IPR015871 GO:0005672|GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0436 Lele-ChrLele28 2759440 2770264 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0431 25 2684110 2687712 Lele28g0436 28 2759440 2770264 hybridization
Lele26g0442 26 2777167 2782856 Lele28g0436 28 2759440 2770264 hybridization