Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0397 ATGAGGGTTAACCAGGTTGAGTCCCCCAGAGACGAGCACGGATCGTCGATTCTGGATCTTGCTAGGGCTGACATCATCGACTCATCAGCCAAAACTAGCAACTGTTCTGCTTGTCCCAGGTCTGGGTCTGGCTTAATGGAGTTTCAGACGCCATACCCAGACCAAGTCCTCGAGAATGTACTGGAGAACGTCCTCCACTTCCTTACGGCGCGCCGCGACCGTAACGCTGCCTCATTGGTCTGCAAGTCATGGTACCGTGCTGAGGCGCTTACCCGATCCGAACTCTTCATCGGTAATTGCTATGCGGTGTCACCGCACCGCGCAACCTCCCGGTTCACCCGGGTTCGTTCCGTCGCGATTAAAGGGAAGCCGAGGTTCGCAGACTTCGATCTGATGCCGCTCAACTGGGGGGCCCACTTTTCGCCGTGGGTCGCTGCCATGGCCAAGGCTTATCCTTGGCTGGAGAAGGTTTATCTGAAGCGCATGTGTGTGACGGACGAGGATTTGGTTCTTCTCTCTGAATCCTTCCCCTGCTTGAAAGAACTTGTCCTCGTATGCTGCGAAGGGTTTGGGACCATTGGACTTGCCGCCGTTGCCGGCAGATGCAGGCAGTTGAGAGTACTTGATCTTGTTGAATCTGAGGTCGAGGACGATGAAGTGGAATGGCTATCATGTTTTCCAGAAAGTCAAACCCACTTGGAATCTCTTGTTTTCGATTTCTTAGACTTCCCTGTTAATTTCGATGCATTGGAGAGACTAGTGGCTAGGTCACCTTCGTTAAAGAAACTTAGGTTGAATGGTTTTGTTACCACCTCTCAGCTTTACCGCCTGATTATTCGTGCGCCGCAGCTCACTCATCTTGGAACAGGTTCATTCAGTGCATCAGAGGCTGTAGCTGACGGCAATCAGGAACCAGATTATGCCTCTGCATTTGCAGCTTGCAAATCCTTAGTTTGTCTATCTGGATTCAGGGAGATTTTCCCAGATTACCTTCCTGCAATCTATCCAGTTTGCACCAATCTCACATCTTTGAATTTCAGCTATGCCAATATTAATGCTGAACAGTTGAAATCAGTCATTTGCCAGTGTCATAAACTGCAGACATTATGGGTCTTGGATTCAGTATGTGATGAAGGCCTTCAAGCAGTGGCTGCAACTTGCAAGGATCTCCGTGAGCTTCGGGTCTTTCCTGAAAATGCTAATGAGGATGCTGAGGGGCCAGTTTCTGAGGTGGGCTTTCAAGCAATTTCTGAGGGTTGTAATAAATTACAATCAATTTTGTATTTCTGCCAAAGAATGACAAATGCAGCTGTAGTAGCCATGTCAAAGAATTGCCCAGATCTAGTAGTTTTTCGTCTTTGTATCATTGGGCGATACCGGCCAGATGCGGTGACTGGGGAACCCATGGATGAGGGTTTTGGTGCTATTGTTATGAATTGCAAGAAGCTCACTCGACTTGCTGTATCTGGTTTACTGACTGACCGAGCTTTTGGTTACATTGGGAAATATGGGAAATTGGTTAGGACACTGTCGGTTGCTTTTGCTGGTGACACTGACATGGGGCTTAAATATGTTTTGGAGGGATGCCATAATCTTCAAAAACTTGAAATCAGGGATAGTCCATTTGGTGATGAAGCTTTACATTCGGGTATGCATCATTATTACAACATGAGGTTTGTCTGGATGTCATCTTGTAAACTGACTCGCCTTGCTTGCCGAGAAGTTGCACGAGCACTGCCTCATCTGGTGGTGGAAGTGATTAGAGGTGAAGAAGAGAGCAATGTTGATGATAATGTTGAGACATTATACATGTATCGATCCCTTGATGGACCAAGAGATGATACTCCCAAATTTGTCACCATCATGCAGTAG 1872 0.4744 MRVNQVESPRDEHGSSILDLARADIIDSSAKTSNCSACPRSGSGLMEFQTPYPDQVLENVLENVLHFLTARRDRNAASLVCKSWYRAEALTRSELFIGNCYAVSPHRATSRFTRVRSVAIKGKPRFADFDLMPLNWGAHFSPWVAAMAKAYPWLEKVYLKRMCVTDEDLVLLSESFPCLKELVLVCCEGFGTIGLAAVAGRCRQLRVLDLVESEVEDDEVEWLSCFPESQTHLESLVFDFLDFPVNFDALERLVARSPSLKKLRLNGFVTTSQLYRLIIRAPQLTHLGTGSFSASEAVADGNQEPDYASAFAACKSLVCLSGFREIFPDYLPAIYPVCTNLTSLNFSYANINAEQLKSVICQCHKLQTLWVLDSVCDEGLQAVAATCKDLRELRVFPENANEDAEGPVSEVGFQAISEGCNKLQSILYFCQRMTNAAVVAMSKNCPDLVVFRLCIIGRYRPDAVTGEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFGYIGKYGKLVRTLSVAFAGDTDMGLKYVLEGCHNLQKLEIRDSPFGDEALHSGMHHYYNMRFVWMSSCKLTRLACREVARALPHLVVEVIRGEEESNVDDNVETLYMYRSLDGPRDDTPKFVTIMQ 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0397 623 Gene3D Ribonuclease Inhibitor 94 622 IPR032675 -
Lele28g0397 623 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 162 585 - -
Lele28g0397 623 Pfam F-box 54 93 IPR041567 -
Lele28g0397 623 FunFam Transport inhibitor response 1 93 622 - -
Lele28g0397 623 SMART LRR_CC_2 420 444 IPR006553 -
Lele28g0397 623 SMART LRR_CC_2 480 503 IPR006553 -
Lele28g0397 623 SMART LRR_CC_2 363 386 IPR006553 -
Lele28g0397 623 SMART LRR_CC_2 529 553 IPR006553 -
Lele28g0397 623 SMART LRR_CC_2 176 201 IPR006553 -
Lele28g0397 623 FunFam Transport inhibitor response 1-like protein 47 92 - -
Lele28g0397 623 SUPERFAMILY RNI-like 79 584 - -
Lele28g0397 623 SUPERFAMILY F-box domain 53 87 IPR036047 GO:0005515
Lele28g0397 623 Pfam Transport inhibitor response 1 protein domain 114 159 IPR041101 -
Lele28g0397 623 Gene3D - 49 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0397 Lele-ChrLele28 2433814 2436115 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0388 25 2352504 2354805 Lele28g0397 28 2433814 2436115 hybridization
Lele26g0401 26 2426697 2435124 Lele28g0397 28 2433814 2436115 hybridization