Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0368 ATGGCTGGTGGGGGATGTAGCATAGTGTGGTTCAGAAGAGATCTGAGGTTGGAGGATAATTCGGCACTGGCGGCGGGAATGAGAGCAGGAGCTGTGGTGGCAGTTTTTATATGGGCGCCTGAAGAAGAGGGTCAATACCAGCCGGGAAGGGTTTCTAGGTGGTGGCTCAAACAAAGTTTGTCTCTTCTTGATTCTTCTTTGCGGAATCTTGGCATTGCTCTTGTCACCAAGCGATCCACTGATAGTGTTTCTTCTCTCCTGGAGGTTATCAATTCCACTGGAGCCTCGCAACTCCTTTTTAACCACTTATATGATCCCCTGTCACTTATCAGGGATCACCGGGCGAAGGAGGTGCTGACTGCTCAAGGCATTGCCGTACGTTCCTTTAATGCAGATTTACTGTATGAACCATGGGATGTGAATGATGCACATGGCCAGCCATTCACAACTTTTTCTGCGTTTTGGGGAAGATGCCTCAGCATGCCTTATGACCCAGAGGCACCTCTTCTCCCTCCTAAAAGAATTGTTGCAGGGGATGTATCGAGGTTCTCTTCTGATACACTAGAGTTTGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTTGCCCGAGCATGGTCACCTGGATGGAGCAATGCCGACAAGGCTTTAACCACATTCATAAATGGTCCATTGGTTGAGTACTCAAAAAATCGCAGGAAAGCTGACAGTGCCACAACCTCATTTCTTTCCCCACATTTGCACTTTGGAGAGGTGAGTGTGAAAAAGGTCTTCCATCTGGTCCGGATTAAGCAAGTTTTATGGACCAATGAAGGGAACAAGGCTGGGGAAGAAAGTGTCAACCTGTTTCTCAAGTCTATTGGTCTGAGAGAGTATTCAAGGTACATCAGTTTCAACCATCCCTATAGCCATGAAAGGCCTCTTGTAGGCCATCTCAGGTTCTTCCCATGGGTCGTAAATGAAAGCTACTTTAAAGCATGGAGACAAGGACGAACTGGGTACCCCTTAGTGGATGCTGGGATGAGAGAGTTGTGGGCTACTGGTTGGCTGCATGATCGAATACGTGTTGTTGTTTCCAGTTTCTTTGTGAAGGTTCTGCAACTTCCCTGGAGATGGGGAATGAAGTATTTCTGGGACACTCTCTTAGATGCAGATCTTGAGAGTGATTCTCTTGGTTGGCAGTACATATCTGGTTCTCTCCCTGATGGCCTTCCATTTGACCAAATAGATAACCCACAGTTTCAGGGATACAAGTTTGATCCCAATGGAGAATATGTTCGACGTTGGCTTCCAGAACTTGCCAGAATACCCACCGAATGGATTCATCACCCATGGAACGCACCAGAACCCATGCTACAAGCTGCTGGAATTGAACTGGGGTCAAATTACCCTCTTCCTATTGTTTTAATAGATGCTGCAAAAGCCAGATTGGAAGAAGCAATAACAGTAATGTGGCAACAAGAAGCAGCTTCAAGAGCCGCCATTGAAAATGGAACTGAAGAAGGGCTTGGAGACTCCTTTGAAACAACTCCTATTGCCTTTCATCAAGACATACAAATGGAGGAAAGTCATGAACCTGTTAGACACATGCCCCCTCCTATTGCTCGCCCCTACCAGGATCAGATGGTCCCAAGCATCACTTCTTCCCTTTCGAGAGTGGAAGATGAAGAAACTTCTTCAGATCTTCGAAACACGACAGTAGATAGCAGGGCTGAAGTGCCAATCAATTTAAATGTAAATCAAAATGCAAGGGCAAGAGAAACACTGAACCAACGGATGTTGCAAGCTGTTCAAGGAAATACCCAAGTACAGAATACTGCCTTGGAACTGAGAAATGCAGCTGAAGATTCGACAGCAGAATCTTCAAGAGATGAAAATGGCAGAGGAGCTAGTTCATCTTACTTGCAGAGCCATCCTCAGTCTCACCAACTTATGAATTGGAGGCGGCTACCTCAGACCGGTGTAGAAGCAAAGTTGGAGAATTCTGTTGCGGCTGATGTTGGGGGAATCTGGGATGATGAAGCCTCATTGGACAGGCATCTGCTGCTTGGATTTGAAGATACCACCAACCCAAGAATGATCCCACATCTGCTTCACAAAGCTACTATATCTCAATTCGTACGTGTTTCTCTGTTCTTTAATTTGTATGTTGCTGAATATAATGATTTAAAACTGTTATATCCTGCAATTCCTGCAAGAAGTGATGCACTCATACTGGACCTTATACAAAAGCACCCAATAAAAATCCATGAACGCGAGGCAACTTCTTTTCTTGTTTTTGTCAAAGACTCCGGAAGACTCCGTAAACGGTTTCATGTAACAGAGCATTGCGTCCTCAGGAAGACAGAGTCGAAACCTTCTCTAAATTTTGATTGGACCTCTCGTGATTCTGGAGGAAGTTTGTGA 2406 0.4539 MAGGGCSIVWFRRDLRLEDNSALAAGMRAGAVVAVFIWAPEEEGQYQPGRVSRWWLKQSLSLLDSSLRNLGIALVTKRSTDSVSSLLEVINSTGASQLLFNHLYDPLSLIRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAHGQPFTTFSAFWGRCLSMPYDPEAPLLPPKRIVAGDVSRFSSDTLEFEDESEKASNALLARAWSPGWSNADKALTTFINGPLVEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVLWTNEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLVGHLRFFPWVVNESYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDSLGWQYISGSLPDGLPFDQIDNPQFQGYKFDPNGEYVRRWLPELARIPTEWIHHPWNAPEPMLQAAGIELGSNYPLPIVLIDAAKARLEEAITVMWQQEAASRAAIENGTEEGLGDSFETTPIAFHQDIQMEESHEPVRHMPPPIARPYQDQMVPSITSSLSRVEDEETSSDLRNTTVDSRAEVPINLNVNQNARARETLNQRMLQAVQGNTQVQNTALELRNAAEDSTAESSRDENGRGASSSYLQSHPQSHQLMNWRRLPQTGVEAKLENSVAADVGGIWDDEASLDRHLLLGFEDTTNPRMIPHLLHKATISQFVRVSLFFNLYVAEYNDLKLLYPAIPARSDALILDLIQKHPIKIHEREATSFLVFVKDSGRLRKRFHVTEHCVLRKTESKPSLNFDWTSRDSGGSL 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0368 801 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Lele28g0368 801 Pfam Blue/Ultraviolet sensing protein C terminal 511 622 IPR020978 -
Lele28g0368 801 PRINTS DNA photolyase signature 332 348 IPR002081 -
Lele28g0368 801 PRINTS DNA photolyase signature 391 405 IPR002081 -
Lele28g0368 801 PRINTS DNA photolyase signature 352 370 IPR002081 -
Lele28g0368 801 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Lele28g0368 801 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Lele28g0368 801 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Lele28g0368 801 MobiDBLite consensus disorder prediction 612 642 - -
Lele28g0368 801 Pfam DNA photolyase 7 162 IPR006050 -
Lele28g0368 801 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Lele28g0368 801 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Lele28g0368 801 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 488 IPR036134 -
Lele28g0368 801 MobiDBLite consensus disorder prediction 624 642 - -
Lele28g0368 801 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Lele28g0368 801 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 481 IPR014134 GO:0009785|GO:0009882
Lele28g0368 801 Gene3D HUPs 8 206 IPR014729 -
Lele28g0368 801 PANTHER CRYPTOCHROME 6 490 IPR002081 -
Lele28g0368 801 MobiDBLite consensus disorder prediction 548 569 - -
Lele28g0368 801 Gene3D - 134 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0368 Lele-ChrLele28 2247189 2255751 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0352 25 2153224 2157174 Lele28g0368 28 2247189 2255751 hybridization
Lele26g0369 26 2232319 2242901 Lele28g0368 28 2247189 2255751 hybridization