Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0223 ATGGAAAGAGAGAAGTCATCCGTGGAGCAAATCCAGCCCCCAACTTATGGGAACTTGGTAACCATTCTGAGCATCGATGGCGGTGGTATTAGGGGTATTATCCCCGCAACTATTCTTGCTTTCCTCGAATCTGAACTCCAGGAGCTGGATGGGGAGGATGCAAGACTTGCAGACTATTTCGACGTGATCGCAGGAACAAGCACCGGCGGTCTTGTAACGGCCATGTTAACTGCTCCAGATGAAAACAATCGCCCGGTAATCAGATCATTGGGAGGACCCAAATACGATGGAAAATATCTTCACTGGATCGTTGGAGAGAAGCTGGGGGAAACTCGTTTGCACCAGACACTCACCAACATTGTCATTCCCACCTTCGATATCAAGAACTTGCAGCCAACCATTTTTTCTTCTTATCAGATTAAGAGGTCTCCTTGCTTGAACGCAACACTAGCGGACATATGCATCAGCACATCGGCGGCGCCTACGTATCTTCCTGCACACCACTTCAAGAACAAAGACGCCACCGGAAAAGAATTTGAATTCAACCTTATTGACGGTGGCGTAGCTGCCAATAATCCGGTACAACACACATTAATCAATTTCCAACAAACTGATGCTTATTCAATTACACTGGTGGCTATGAACCAAATAACGAAACAGATAATGGACGAGAATCCAGACTTCTACCCAATAAAGCCTTTGGAATTTAGACGCTTCCTAATAATCTCATTAGGGACGGGCACGCCCAAGAATGACCACAAATTCACGGCACAACTAGCAGCCAAATGGGGCCTACTTGGTTGGCTTTCCCATGGCGGCTCTACTCCATTGGTGGACGTCTTCACTCAGTCAAGTGCCGATATGGTTGATTTCCACGTTGCTACTGTCACTCAAGCACTTCAATGCGAAGATCATTACCTCCGAATACAGGATGATACACTGACGGGAACGGTTTCTTCGGTTGATATTGCTACGGAAGAGAACTTGCAGAAGCTGGAACAAATTGGGGAAAGGCTGTTGAAGAAACCAGTCGCTAGGGTGAACTTAGAAACTGGGCAGCTTGAGTCAGCAGAGAACGGAGGGACCAATGAGGAAGCTCTCATTAGGTTTGCGAAATTACTTTCCCATGAGAGGAGACTCCGAGAAATGCAATCTCCACACACCAACAAGGCCTTGCGCAAGGGCTCCATCGGGGTGAGAGTTTGTCAGGTATGGACAGGCTTCAAAGAATGTTCGCAGGTGCAGGAGGCGCATTGGAGCACCCGCCCCCTGATTCGCCCACCCTTGATTCAGCTGAGGAGGTTTATATCTCATCATTGGCCCTTCTCAAGATGCTTAAACACGGAAGGGCTGGTGTTCCCATTGGAAGTGATGGGCTTGATGTTGGGAGAGTTTGTGGATGAGTACACTGTACGCGTTGTAGATGTTTTTGCTAGGCCACAGAGTGGTACCGGTGTTAGTGTTGAAGCCGTGGATCACGTTTTTCAGACTAACATGCTCAATATGCTGAAACAGACTGGAAGAATTATGTTCGAAGTTCTGGGCAACAACGCGCAAAGATAA 1563 0.4766 MEREKSSVEQIQPPTYGNLVTILSIDGGGIRGIIPATILAFLESELQELDGEDARLADYFDVIAGTSTGGLVTAMLTAPDENNRPVIRSLGGPKYDGKYLHWIVGEKLGETRLHQTLTNIVIPTFDIKNLQPTIFSSYQIKRSPCLNATLADICISTSAAPTYLPAHHFKNKDATGKEFEFNLIDGGVAANNPVQHTLINFQQTDAYSITLVAMNQITKQIMDENPDFYPIKPLEFRRFLIISLGTGTPKNDHKFTAQLAAKWGLLGWLSHGGSTPLVDVFTQSSADMVDFHVATVTQALQCEDHYLRIQDDTLTGTVSSVDIATEENLQKLEQIGERLLKKPVARVNLETGQLESAENGGTNEEALIRFAKLLSHERRLREMQSPHTNKALRKGSIGVRVCQVWTGFKECSQVQEAHWSTRPLIRPPLIQLRRFISHHWPFSRCLNTEGLVFPLEVMGLMLGEFVDEYTVRVVDVFARPQSGTGVSVEAVDHVFQTNMLNMLKQTGRIMFEVLGNNAQR 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0223 520 Gene3D Cytidine Deaminase, domain 2 442 515 - -
Lele28g0223 520 Gene3D Cytosolic phospholipase A2 catalytic domain 9 386 - -
Lele28g0223 520 SUPERFAMILY FabD/lysophospholipase-like 18 351 IPR016035 -
Lele28g0223 520 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 23 198 IPR002641 GO:0006629
Lele28g0223 520 PANTHER XYLOSE ISOMERASE 4 383 - -
Lele28g0223 520 CDD Pat17_isozyme_like 17 352 - -
Lele28g0223 520 Pfam Patatin-like phospholipase 23 79 IPR002641 GO:0006629
Lele28g0223 520 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 456 515 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0223 Lele-ChrLele28 1302150 1308520 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0223 1 393 Miscellaneous Gene Families AT2G26560 56.840 2.88e-165 472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0205 25 1223665 1226233 Lele28g0223 28 1302150 1308520 hybridization
Lele26g0213 26 1252689 1255250 Lele28g0223 28 1302150 1308520 hybridization