Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1883 ATGGAGAGGCTTCAACGGATGTTCGCAGGTGCAGGAGGTGCGCTGGGGCATCCGCCCCCGGATTCGCCCACCCTTGATTCAGCCGAGCAGGTTTATATCTCGTCGTTGGCCCTTCTCAAAATGCTTAAACACGGAAGGGCTGGTGTTCCCATGGAAGTGATGGGCTTGATGTTGGGAGAGTTTGTGGATGAGTACACTGTCCGCGTCGTAGATGTTTTTGCGATGCCACAGAGTGGTACCGGTGTTAGTGTTGAAGCCGTGGATCATGTTTTTCAGACTAACATGCTCGATATGTTGAAACAGACTGGAAGACCAGAGATGGTTGTGGGGTGGTATCATTCCCATCCTGGATTTGGCTGTTGGCTTTCTGGAGTGGACATAAATACACAACAGAGTTTTGAGGCTTTAAATCAACGTGCTGTGGCTGTGGTGGTTGATCCTATTCAGAGTGTTAAAGGCAAGGTGGTGATTGATGCTTTTAGGCTTATCAATCCACAAACTATGATGCTGGGTCAGGAACCACGGCAAACAACATCTAACCTTGGTCATCTTAATAAGCCATCTATACAAGCTTTGATCCATGGCTTGAACCGACATTATTATTCCATAGCAATCAATTACAGGAAAAATGAGCTTGAAGAGAAGATGTTGCGTAACCTTCACAAGAAGAAATGGACTGATGGTTTGACACTAACGCGATTTGATTCACATTCCAAAACTAATGAACAGACTGTCCAGGAGATGCTGAATTTAGCGGCCAAGTACAACAAGGCAGTGCAAGATGAGGATGAGCTTCCGCCCGAAAAGCTAGCAATTGCTAACGTGGGAAGGCAAGATGCTAAGAAGCACCTTGAAGAGCACGTTTCCAATTTGATGTCTTCTAACATTGTTCAAACTTTGGGAATGATGCTAGATACCGTTGTATTTTAG 930 0.4559 MERLQRMFAGAGGALGHPPPDSPTLDSAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLRNLHKKKWTDGLTLTRFDSHSKTNEQTVQEMLNLAAKYNKAVQDEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTVVF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1883 309 Gene3D Cytidine Deaminase, domain 2 17 234 - -
Lele27g1883 309 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 27 138 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele27g1883 309 SMART pad1_6 30 165 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele27g1883 309 FunFam 26S proteasome non-ATPase regulatory subunit 20 234 - -
Lele27g1883 309 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 25 306 - -
Lele27g1883 309 ProSiteProfiles MPN domain profile. 31 166 IPR037518 -
Lele27g1883 309 CDD MPN_RPN11_CSN5 20 286 - -
Lele27g1883 309 SUPERFAMILY JAB1/MPN domain 31 168 - -
Lele27g1883 309 Pfam Maintenance of mitochondrial structure and function 173 296 IPR024969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1883 Lele-ChrLele27 23515879 23518438 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0205 25 1223665 1226233 Lele27g1883 27 23515879 23518438 hybridization
Lele26g0213 26 1252689 1255250 Lele27g1883 27 23515879 23518438 hybridization