Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1875 ATGCAGAGTTGCCGCTACCTCACCCCCAAAACATGGGCCCCGACTAGCCTACATCGGACAAATCGCCACCCCCGATTACCGACCCACACCGTCAGGCTCCGATCACCACCACCGATCTCCGCCGTGGCCGCTCCACTCAAAAATCGAAAGGCTCACTCCATGCCGCCGGAGAAGGCCGAAGTTTTCAAGTCACTGGAACGCTGGGCTTCGGATGGGCTGCTGCCGCTGCTGAAGCCGGTGGACCAGAGCTGGCAGCCGCAGAACTTCGTGCCCGACTCATCGTTGCCGTTAGGTGAATTCATGGATCAAGTAAAGGCACTGCGCGATCGGACGGCCGAGCTCCCGGATGAGTACTTTGTGGTACTGGTGGGTGATATGATCACGGAGGATGCATTGCCTACATATCAGAGCATGATAAACAACCTGGATGCGGTTGGGGACGAGTCCGGAGCAAGCCCGGATCCGTGGGCCGTTTGGACCCGTTCTTGGACTGCGGAGGAGAATAGGCATGGGGATTTGCTAAGGACCTATCTCTATCTATCGGGTCGGGTTGATATGCTCATGGTCGAAAAGACAGTACAGTATTTGATTGGGGCTGGAATGGATCCGGGGACAGAAAACAACCCATATTTGGGATTCGTTTACACGTCGTTTCAAGAGCGAGCCACATTCGTATCACACGGCAACACGGCTCGCTTAGCGAAGGAGGGCGGAGATCCGGTGCTGGCGCGCATATGTGGCACCATCGCCGCGGACGAGAAACGGCACGAGAATGCGTACGCGAGTATCGTCGAGAAGCTGCTGGAAGTGGACCCCACGGGAGCGATGCTGGCCATCGCAGACATGATGCACAAGAAGATCACCATGCCGGCCCATTTGATGTACGACGGGAAGGACCCACGCCTGTTCGAGCATTTCTCTGCGGTGGCGCAGCGGATGGGGGTGTACACGGCGAACGATTACGCGGACATATTAGAGTTTTTGATCGGGCGATGGAAGTTGGAGAAGCTGGAAGGGCTGACGGGCGAAGGGAAGCGTGCACGGGATTTCGTGTGTGGACTAGCGCCGAGGATTAGGAAGTTGCAAGAGCGAGCCGACGAGCGAGCGCGCAAGATGGGGGCCCATGGCGTCAAATTCAGCTGGATCTTCAACAAGGAGGTGGCCTTGACCATGTAA 1176 0.5714 MQSCRYLTPKTWAPTSLHRTNRHPRLPTHTVRLRSPPPISAVAAPLKNRKAHSMPPEKAEVFKSLERWASDGLLPLLKPVDQSWQPQNFVPDSSLPLGEFMDQVKALRDRTAELPDEYFVVLVGDMITEDALPTYQSMINNLDAVGDESGASPDPWAVWTRSWTAEENRHGDLLRTYLYLSGRVDMLMVEKTVQYLIGAGMDPGTENNPYLGFVYTSFQERATFVSHGNTARLAKEGGDPVLARICGTIAADEKRHENAYASIVEKLLEVDPTGAMLAIADMMHKKITMPAHLMYDGKDPRLFEHFSAVAQRMGVYTANDYADILEFLIGRWKLEKLEGLTGEGKRARDFVCGLAPRIRKLQERADERARKMGAHGVKFSWIFNKEVALTM 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1875 391 Gene3D Ribonucleotide Reductase, subunit A 42 389 IPR012348 GO:0016491
Lele27g1875 391 FunFam Stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic 41 389 - -
Lele27g1875 391 CDD Acyl_ACP_Desat 57 365 IPR005067 GO:0006631|GO:0045300
Lele27g1875 391 SUPERFAMILY Ferritin-like 47 387 IPR009078 -
Lele27g1875 391 Pfam Fatty acid desaturase 57 383 IPR005067 GO:0006631|GO:0045300
Lele27g1875 391 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 47 387 IPR005067 GO:0006631|GO:0045300
Lele27g1875 391 MobiDBLite consensus disorder prediction 15 34 - -
Lele27g1875 391 PIRSF Dlt9_acylACP_des 11 389 IPR005067 GO:0006631|GO:0045300
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1875 Lele-ChrLele27 23481327 23482848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g1875 32 389 Acyl Lipid Metabolism Gene Families AT1G43800 77.198 0.0 593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0221 26 1281231 1282835 Lele27g1875 27 23481327 23482848 hybridization