Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1730 ATGTCTGGTGGGGGATGTAGCATAGTGTGGTTCAGAAGAGATCTGAGGTTGGAGGATAATTCGGCACTGACGGCGGGAATGAGAGCGGGAGCTGTGGTGGCCGTTTTTATATGGGCGCCTGAAGAAGAAGGTCAATACCAGCCCGGAAGGGTTTCCAGGTGGTGGCTCAAACACAGTTTGGCTCTTCTCGATTCTTCTTTGAGGAGTCTGGGCATTTCTCTTGTCACCAAGCGATCCACTGATTGTGTTTCTTCTCTCCTGGAGGTTATCAATTCCACTGGAGCCTCTCAACTCTTTTTTAACCACTTATATGATCCTCTGTCACTTATCAGGGATCATCGGGCGAAGGAGGTGCTGACTGCTCAAGGCATAGCCGTACGTTCCTTCAATGCAGATTTACTGTATGAACCATGGGATGTGAATGATGCGCATGGCCAGCCATTCACAACCTTTTCTGCTTTTTGGGAAAGATGCCTCAGCATGCCTTATGACCCCGAGGCACCTCTTCTCCCGCCTAAAAGAATTATTGCAGGTGATGTATCGAGGTGCTCTTCTGATACACTAGTGTTTGAAGATGAATCAGAAAAGGCAAGCAACGCACTTCTTGCCCGAGCATGGTCACCTGGATGGAGCAATGCCGACAAGGCTTTAACCATATTCATAAATGGCCCATTGATTGAGTACTCAAAAAATCGTAGGAAAGCTGACAGTGCCACAACCTCATTTCTTTCCCCACATTTGCACTTTGGAGAGGTGAGTGTGAAAAAGGTCTTCCATCTGGTTCGAATTAAGCAAGTTTTATGGGCCAATGAAGGGAACAAGGGTGGTGAAGAAAGTGTCAACCTGTTTCTCAAGTCTATTGGTCTGAGAGAGTATTCAAGGTACATCAGTTTGAACCATCCCTATAGCCATGAAAGGCCTCTTCTGGGCCATCTCAGGTTCTTTCCATGGGTTGTAAATGAAAGCTACTTTAAGGTATGGAGACAAGGAAGAACTGGGTACCCCTTAGTGGATGCTGGGATGAGAGAATTGTGGGCTACCGGTTGGCTGCACGATCGAATACGTGTTGTTGTTGCCAGTTTCTTTGTGAAGGTTCTACAGCTTCCCTGGAGATGGGGAATGAAATATTTTTGGGACACTCTCTTAGATGCAGATCTTGAGAGTGATGCACTTGGTTGGCAGTACATATCTGGTACTCTCCCTGATGGCCGTCCATTTGACCAAATAGATAACCCACAGTTTCAGGGATACAAATTTGATCCAAATGGAGAATATGTACGACGTTGGCTTCCAGAACTTGCCCGAATACCCACCGAATGGATTCATCACCCATGGAACGCACCAGAACCTGTGCTACAAGCTGCTGGAATCGAACTGGGGTCAAATTACCCTCTTCCTATTGTTGGAATTGATGCTGCAAAAGCCAGATTGGAAGAAGCAACAACAGTAATGTGGCAACAAGAAGCGGCTTCAAGAGCGGCCATTGAAAATGGAACTGAAGAAGGACTTGGAGACTCCTTTGAAACAACCCCTATTGCCTTTCCTCAAGACATACAAATGGAGGAAAGCCATGAACCTTTTAGACACAATCCCCCGCCTTTTGCTCGCCCCTACGAGGATCAGATGGTCCCAAGCATCACTTCCCTTTCGAGAGTGGAAGAGGAAGAAACTTCTTCAGATTTCCGAAACACGACAGGAGATGGCAGGGCTGAAGTGCCAATCAATGTAAATGTAAGTCAAAATGCAAGGGCAAGAGAAACATTGAACCAACGGATGTTGCAGGCTGTTCAAGGGAACACCCAAGTACAGAATACTGCAGTGGAACTGAGAAATGCAGCTGAAGAGTCCACAGCAGAATCTTCAAGTAGTAGTAGGAGAGAAAGGGACGGAGGTGTAGTTCCTGTATGGTCTCCTTCAGCTTCTAATTACTCAGAGCAAATTGTAGGAGATGAAAATGGCAGAGGAGCTAGTTCATCTTACTTGCAGAGCCATCCTCAATCTCACCAACTCATGAATTGGAGGCGGCTACCTCAGACTGGGTAA 2043 0.4665 MSGGGCSIVWFRRDLRLEDNSALTAGMRAGAVVAVFIWAPEEEGQYQPGRVSRWWLKHSLALLDSSLRSLGISLVTKRSTDCVSSLLEVINSTGASQLFFNHLYDPLSLIRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPEAPLLPPKRIIAGDVSRCSSDTLVFEDESEKASNALLARAWSPGWSNADKALTIFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNKGGEESVNLFLKSIGLREYSRYISLNHPYSHERPLLGHLRFFPWVVNESYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRPFDQIDNPQFQGYKFDPNGEYVRRWLPELARIPTEWIHHPWNAPEPVLQAAGIELGSNYPLPIVGIDAAKARLEEATTVMWQQEAASRAAIENGTEEGLGDSFETTPIAFPQDIQMEESHEPFRHNPPPFARPYEDQMVPSITSLSRVEEEETSSDFRNTTGDGRAEVPINVNVSQNARARETLNQRMLQAVQGNTQVQNTAVELRNAAEESTAESSSSSRRERDGGVVPVWSPSASNYSEQIVGDENGRGASSSYLQSHPQSHQLMNWRRLPQTG 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1730 680 MobiDBLite consensus disorder prediction 549 569 - -
Lele27g1730 680 Pfam DNA photolyase 7 163 IPR006050 -
Lele27g1730 680 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Lele27g1730 680 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Lele27g1730 680 PRINTS DNA photolyase signature 332 348 IPR002081 -
Lele27g1730 680 PRINTS DNA photolyase signature 391 405 IPR002081 -
Lele27g1730 680 PRINTS DNA photolyase signature 143 159 IPR002081 -
Lele27g1730 680 PRINTS DNA photolyase signature 352 370 IPR002081 -
Lele27g1730 680 Gene3D HUPs 8 206 IPR014729 -
Lele27g1730 680 PANTHER CRYPTOCHROME 6 490 IPR002081 -
Lele27g1730 680 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Lele27g1730 680 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 176 IPR036155 -
Lele27g1730 680 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 488 IPR036134 -
Lele27g1730 680 MobiDBLite consensus disorder prediction 637 680 - -
Lele27g1730 680 MobiDBLite consensus disorder prediction 611 680 - -
Lele27g1730 680 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Lele27g1730 680 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Lele27g1730 680 Coils Coil 599 619 - -
Lele27g1730 680 Pfam Blue/Ultraviolet sensing protein C terminal 511 625 IPR020978 -
Lele27g1730 680 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 480 IPR014134 GO:0009785|GO:0009882
Lele27g1730 680 Gene3D - 134 293 - -
Lele27g1730 680 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1730 Lele-ChrLele27 22591199 22594919 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0352 25 2153224 2157174 Lele27g1730 27 22591199 22594919 hybridization
Lele26g0369 26 2232319 2242901 Lele27g1730 27 22591199 22594919 hybridization