Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1299 ATGGCTCTTCTCAGCCGAACCTCCTCGCGCCTCCCGCAGCTTGTGTCTCCTCAACGTGTAGTTTCCCTCCACACCACTCTCCCCTCTCTCTCCGCCGCCTCATCTTCCGGCACCGCCTCGCCGACACCGTATGCTCGGCCTCCACCCCCATCCGCTTCCTCCCCTCCCGGTCTCTCCAAGGCCGCAGAGTATGTGATCTCCAAGGTTGACGATCTCCTCAACTGGGCTCGCCGTGGTTCCATCTGGCCCATGACCTTTGGTCTTGCTTGCTGCGCTGTCGAAATGATGCACACCGGAGCCTCCCGTTACGATCTCGACCGCTTCGGTATCATTTTCAGGCCCAGCCCTCGCCAGTCTGACTGCATGATTGTCGCTGGCACTCTCACCAACAAGATGGCCCCTGCTCTCCGCAAGGTTTATGACCAAATGCCGGAGCCTAGATGGGTCATCTCTATGGGAAGTTGTGCTAATGGAGGAGGATACTACCACTACTCCTACTCTGTTGTTCGAGGATGTGACAGAATAGTTCCTGTTGACATTTATGTTCCGGGCTGTCCACCAACTGCTGAGGCCTTGCTATATGGACTCCTCCAGTTGCAGAAGAAGATCAACAGGCGTAAGGACTTCCTCTTGTGGTGGACAAAGTGA 648 0.5617 MALLSRTSSRLPQLVSPQRVVSLHTTLPSLSAASSSGTASPTPYARPPPPSASSPPGLSKAAEYVISKVDDLLNWARRGSIWPMTFGLACCAVEMMHTGASRYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLLWWTK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1299 215 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 171 187 IPR006138 GO:0008137|GO:0048038|GO:0051539
Lele27g1299 215 SUPERFAMILY HydA/Nqo6-like 63 207 - -
Lele27g1299 215 TIGRFAM nuoB_fam: NADH-quinone oxidoreductase, B subunit 65 205 IPR006138 GO:0008137|GO:0048038|GO:0051539
Lele27g1299 215 Gene3D - 61 215 - -
Lele27g1299 215 PANTHER NADH DEHYDROGENASE 59 214 - -
Lele27g1299 215 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 56 204 IPR006138 GO:0008137|GO:0048038|GO:0051539
Lele27g1299 215 MobiDBLite consensus disorder prediction 30 57 - -
Lele27g1299 215 FunFam NADH-quinone oxidoreductase subunit B 2 57 215 - -
Lele27g1299 215 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 90 199 IPR006137 GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1299 Lele-ChrLele27 19739006 19741643 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0776 25 4942023 4944500 Lele27g1299 27 19739006 19741643 hybridization
Lele26g0784 26 4998579 5001117 Lele27g1299 27 19739006 19741643 hybridization