Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0776 ATGGCTCTTCTCAGCCGAACCTCCTCGCGCCTCCCGCAGCTTGTGTCTCCTCAACGTGTAGTTTCCCTCCACACCACTCTCCCCTCTCTCTCCGCCGCCTCATCTTCCGGCACCGCCTCGCCGACACCGTATGCTCGTCCTCCACCCCCATCGGCTTCCTCCCCTCCCGGTCTCTCCAAGGCCGCAGAGTATGTGATCTCCAAGGTTGACGATCTCCTCAACTGGGCTCGCCGTGGTTCCATCTGGCCCATGACCTTCGGTCTTGCTTGCTGCGCTGTCGAAATGATGCACACCGGAGCCTCCCGTTACGATCTCGACCGCTTCGGTATCATTTTCAGGCCCAGCCCTCGCCAGTCTGACTGCATGATTGTCGCTGGCACTCTCACCAACAAGATGGCCCCTGCTCTCCGCAAGGTTTATGATCAAATGCCGGAGCCTAGATGGGTCATCTCTATGGGAAGTTGTGCTAATGGAGGAGGATACTACCACTACTCCTACTCTGTTGTTCGAGGATGTGACAGAATAGTTCCTGTTGACATCTATGTTCCGGGCTGTCCACCAACTGCTGAGGCCTTACTATATGGACTCCTCCAGTTGCAGAAGAAGATCAACAGGCGTAAGGACTTCCTCTTGTGGTGGACAAAGTTACATCACATGCGAGCATGTTATTTGTTGTTTGTCGTTCTGCTCAACTTCTGTGGAATTTCAGTCCTTGTGGACTTCCATCTGCTTTAA 735 0.5415 MALLSRTSSRLPQLVSPQRVVSLHTTLPSLSAASSSGTASPTPYARPPPPSASSPPGLSKAAEYVISKVDDLLNWARRGSIWPMTFGLACCAVEMMHTGASRYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLLWWTKLHHMRACYLLFVVLLNFCGISVLVDFHLL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0776 244 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 171 187 IPR006138 GO:0008137|GO:0048038|GO:0051539
Lele25g0776 244 FunFam NADH-quinone oxidoreductase subunit B 2 57 215 - -
Lele25g0776 244 Gene3D - 61 215 - -
Lele25g0776 244 TIGRFAM nuoB_fam: NADH-quinone oxidoreductase, B subunit 65 205 IPR006138 GO:0008137|GO:0048038|GO:0051539
Lele25g0776 244 SUPERFAMILY HydA/Nqo6-like 63 210 - -
Lele25g0776 244 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 56 204 IPR006138 GO:0008137|GO:0048038|GO:0051539
Lele25g0776 244 MobiDBLite consensus disorder prediction 30 57 - -
Lele25g0776 244 PANTHER NADH DEHYDROGENASE 59 214 - -
Lele25g0776 244 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 90 199 IPR006137 GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0776 Lele-ChrLele25 4942023 4944500 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0776 25 4942023 4944500 Lele27g1299 27 19739006 19741643 hybridization
Lele25g0776 25 4942023 4944500 Lele28g0772 28 4928773 4931078 hybridization