Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1266 ATGGTTGAACTTCATAGAATCAGTTCAAATTTAATAGATTGGAAGCCTTCTTCGGTAGTATCTTTAGCTAGCAGTGTCGATGGTTTGCAGGTCGCCGCTGCTCGTGAAGATGGCTCCTTGGAGATTTGGCTTGTCTCCCCCGGTTCCGTCGGCTGGCACCGTCAGTTGACTATTCATGGAGACCCTAATGTAAGAGTATCCTCACTTATTTGGTGCCACGGGGGTTCGAGGGGAATGGCATTAGGTCGATTATTCTCATCTAACATCGACGGTTCAGTCTGTAAGTGGGATCTTTCCCACTTGACACAGAAGACTGTGCTAGGTTCAATTGGGGTCTCAATCTGGCAAATGGCGCTGGCACCATCTAAAAGTGACTTAGTTAATACTGAAACAGAGCCTAATCATATGGGGAATGGATATTTGACTTATAATAAAGACAATGATCATGATGAACATGAAACTAGTGACAGCGAAGAAGAGTCTGACTTATCAAATTCTCTTAAAGAACTTGAATATCCTCGTGTAGCAATTGGTTGTGATGATGGATGTGTGCGAATATATGCCATCTCAGACACTGATGAGTTCATGTGTACAAAATCGTTGCCTCGGGTCAGTGGACGAGTTTTAAGTGTGACTTGGAGTACAGATGCAAATTTCATATATTCAGGAAGTAGTGATGGCTTGATACGATGCTGGGATGCTACACTAGGTCATGAAATCTATAGGATTACAGCTGGGCTTGGAGGCCTGGGCAGTGAAACTGAACTTTGTATTTGGTCATTACTGTCCTTAAGGTCTGGGACGCTGGTTAGTGCAGACAGCAGTGGTAGCGTCCAGTTTTGGGACGGACAACAAGGAACTCTCATACAGGCACATTCATTTCACAAGGGAGATGTAAATGCACTGGCTGCAGCTCCAACTCATAACCGAGTGTTCTCTGCTGGCTCTGATGGCAAGATTATCCTGTATAAGCTCTCCAGTGAGTCAGTGTCATCCAACAGTGTTGAGTTACCAGCTGTAATGAAGAGATGGGTTTATGTTGATTATGTGAGGGCTCATACACATGATGTCAGGGCCTTGACTGTGGCGGTACCAATTTGTCGAGAAGATCCCTTGCCAGATGAGAAGATTAAAAGAGCTCGTCGTCAGGAAAAACCCATTGATTTTAGTTATCGTAAATGGGCCCATTTGGGTGTTCCCATGCTGATATCCGCAGGTGATGACACAAAACTCTTTGCATATGCTGTAAAGGAGTTCACTAAATTCTCTCCACATGATATCTGCCCTGCACCACAGAGAGCCCCCATTCAACTAGTGCCAAAAACAGCCTCCAATCAGTCAGCAATTCTTTTTGTCCAGTCTTCTCACCGTTTAGATATTCTTTCTGTGCAACCCAAAAAAGGTGTCTTACCTGACATTACACGCCCCACTTCTGGTGGCTTTTCAAAAAGTGAGTTGCTTGCTCGAGTTAAGAGCAAATTATCTCGGAAAATAATTTGCAGCACTATTGCTGGTTCAGGTGTGCTGTTTGCATACTCTGATCATGTTAAGCCTAGTCTATTTGAATTGAAGAGCCCTAAAGTTGGGAGAAGTGCATGGAGTGTTATGAAAAGGCAACTCCCTGGTGGACTACCATTTGCTCATTCAATGATTTTTACTCACGATTCCTCTCGGTTGATAGTAGCTGGGCATGATCGAAGGATATATATTGTGGACGTGGGAAGCTCAGGATTAGTGCATGTCTTTACCCCATCCCGTGAGATGCAAGATGAGGGGTTACCTCCGACTGAACCTCCCATAACAAGGATGTTTGCCAGTTCTGATGGGCAGTGGCTGGCGGCTGTGAATTGCTTTGGAGATGTATATGTATTCAATCTCGAGATACTAAGGCAGCACTGGTTCATTTCTAGATTAGATGGCGCCTCTGTTACTACTGGCGGATTTCCTCCACAGAACAACAACGTACTTATAGTTACAACTTCTTCAAATCAAGTGTATGCATTGGATGTAGAGGCCAAGCAGTTGGGAGAATGGTCAATGCGGCATTCATTTGTTCTTCCAAAGAGATTCCTGGAATTTCCTGGTGAAGTTATTGGGCTCTCATTCCCTCCCTCAACTTCATCTTCTGTTGTTGTCTACAGTGCCAGGGCAATGTGTTTGATCGATTTTGGGCTGCCAGTGGAGCAAGATGATGGTGATCTATTAAATGCTCAAGATTCAATGGCTAAAGATATACAAAATTTTATCAAGAGGAAACAAAGGCCTAATAGCCATAGGAAGAATTTTGAAATTTTGGAATTCAGGGATCCAGTTTTATTTTTAGCCCATCTTTCAAAACGTTCCGTCTTATTAATAGACAAGCCATGGCTAGAAGTGGTTAAAAGTTTAGAAGCCCAACCAGTCCACAGACATATTTTTGGGACATAA 2427 0.4355 MVELHRISSNLIDWKPSSVVSLASSVDGLQVAAAREDGSLEIWLVSPGSVGWHRQLTIHGDPNVRVSSLIWCHGGSRGMALGRLFSSNIDGSVCKWDLSHLTQKTVLGSIGVSIWQMALAPSKSDLVNTETEPNHMGNGYLTYNKDNDHDEHETSDSEEESDLSNSLKELEYPRVAIGCDDGCVRIYAISDTDEFMCTKSLPRVSGRVLSVTWSTDANFIYSGSSDGLIRCWDATLGHEIYRITAGLGGLGSETELCIWSLLSLRSGTLVSADSSGSVQFWDGQQGTLIQAHSFHKGDVNALAAAPTHNRVFSAGSDGKIILYKLSSESVSSNSVELPAVMKRWVYVDYVRAHTHDVRALTVAVPICREDPLPDEKIKRARRQEKPIDFSYRKWAHLGVPMLISAGDDTKLFAYAVKEFTKFSPHDICPAPQRAPIQLVPKTASNQSAILFVQSSHRLDILSVQPKKGVLPDITRPTSGGFSKSELLARVKSKLSRKIICSTIAGSGVLFAYSDHVKPSLFELKSPKVGRSAWSVMKRQLPGGLPFAHSMIFTHDSSRLIVAGHDRRIYIVDVGSSGLVHVFTPSREMQDEGLPPTEPPITRMFASSDGQWLAAVNCFGDVYVFNLEILRQHWFISRLDGASVTTGGFPPQNNNVLIVTTSSNQVYALDVEAKQLGEWSMRHSFVLPKRFLEFPGEVIGLSFPPSTSSSVVVYSARAMCLIDFGLPVEQDDGDLLNAQDSMAKDIQNFIKRKQRPNSHRKNFEILEFRDPVLFLAHLSKRSVLLIDKPWLEVVKSLEAQPVHRHIFGT 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1266 808 Pfam WD domain, G-beta repeat 208 233 IPR001680 GO:0005515
Lele27g1266 808 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 1 808 IPR044622 GO:0010073|GO:0035266
Lele27g1266 808 SUPERFAMILY WD40 repeat-like 266 711 IPR036322 GO:0005515
Lele27g1266 808 SMART WD40_4 285 324 IPR001680 GO:0005515
Lele27g1266 808 SMART WD40_4 537 572 IPR001680 GO:0005515
Lele27g1266 808 SMART WD40_4 51 97 IPR001680 GO:0005515
Lele27g1266 808 SMART WD40_4 194 233 IPR001680 GO:0005515
Lele27g1266 808 SMART WD40_4 8 44 IPR001680 GO:0005515
Lele27g1266 808 SMART WD40_4 244 282 IPR001680 GO:0005515
Lele27g1266 808 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 242 IPR001680 GO:0005515
Lele27g1266 808 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 333 IPR001680 GO:0005515
Lele27g1266 808 Gene3D - 172 258 IPR015943 GO:0005515
Lele27g1266 808 SUPERFAMILY WD40 repeat-like 16 329 IPR036322 GO:0005515
Lele27g1266 808 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 233 - -
Lele27g1266 808 Gene3D - 2 171 IPR015943 GO:0005515
Lele27g1266 808 Gene3D - 259 686 IPR015943 GO:0005515
Lele27g1266 808 MobiDBLite consensus disorder prediction 137 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1266 Lele-ChrLele27 19457147 19462536 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0812 25 5228589 5233977 Lele27g1266 27 19457147 19462536 hybridization
Lele26g0823 26 5279189 5285377 Lele27g1266 27 19457147 19462536 hybridization