Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g1224 ATGGGCCAGGCTGCTTCCGCGGCCGCAATTCCTTGCCGTCGCCAAGCCAATGACAGCCACCGCTCCACGTCCAAATCCAGATCAACGCCGTTCATTTCTACCATGATTTTCGATGAAAGTCACGAGTCCCCAAATGGGGTAATCCGTGCAGTGCCTGACTACATCTCTGAACTTCCCGACGAGTGTTTGGCTTGCATTTTTCAGTCACTAAGCTCCGCCGACCGTAACCGCTGCTCCCTCGTTTGCCGGCGGTGGTTCCAGGTTGAGGGACAGAGTCGTCACCGTCTCTCCCTTAACGCTCAATCGGATCTTCTCTCGGTTATCCCCTCTCTTTTCTCACGTTTTGATTCCGTCACGAAGCTCGCTTTGAAATGCGACCGTAGATCCGTTAGCATCGGGGACGAAGCGCTCGTTCTCATCTCTCAACGATGCCCTAATCTGACTCGCCTGAAACTCCGGGGTTGCCGTGAACTTATGGATGCTGGCATGGAGGTCTTTGCTAAGAATTGCAAGGGTTTGAAGAAACTTTCCTGTGGATCTTGCTCTTTTGGAGCCCAAGGGATGAACGCAGTGCTCAATCATTGCGCTTCTATAGAAGAATTATCTGTCAAGCGTCTCCGGGGAATTACTGATGTAGCATCGGTGGAGTCTATTGGACCTGGTGTGGCAGCGTCATCTCTCAAAACTATTTGTTTAAAAGAACTATATAATGGACAATGTTTTGGGCCACTTATTCTTGGCTCGAAGAATTTAAGGACTTTGAAGATTTTCAGGTGCTCTGGCGATTGGGATAGACTTTTTCAACTCCTAGCGGATCGAGCACCAAGTATAGTCGAAGTCCACCTTGAGAGGCTCCAGACAAGCGATGTTGGTTTAGAGGCAATCTCGAATTGCTCGAGCCTGGAAGTCTTGCATCTTGTCAAGACTCCAGAGTGCACAGATTTAGGGGTTACCGCAATTGCAGAACGATGCAGGCTCTTAAGGAAACTTCATATTGACGGGTGGAAGACGAATAGAATAGGAGACGAAGGTCTAATAGCGGTCGCTAAATATTGCCCATATCTTCAGGAATTGGTCCTTATTGGTGTCAATCCCACTCATGCGAGTCTGGAAATGTTGGCATCCAATTGCCTGAATCTAGAGCGGTTGGCCTTATGTGGAAGTGAAACAGTTGGCGATGTTGAAATATCGTGCATAGCAACCAAATGCTTAGCATTGAAGAAACTCTGTATTAAGAGTTGCCCTGTGTCTGACCATGGTATGGAAGCACTCGCATCTGGTTGCCCGAATTTGCTGAAAGTAAAGGTTAAGAAGTGCAAGGGTGTGACTTCTGAGGGTGCAGATTTGCTGAGGCTATGTAGGGAGTCGGTTGCTGTAAATTTAGATGCTGGTGAAAAAGAACATCAGGACGCAAGTGCCAATGATGGTGGAGCTCAAGAAAATGGCATAGAATTTCCTTCAATCCCCAGCCAAGCAGCGGCCTCTGCCACCATTGCATCAAGCAGTACTGGTCGATCAAGTTCATTCAAGTCAAGGCTAGGACTTCTCGCTGGGAAAAGCTACATCGTCTGCACTTTGAGAAGATTGTCTGGTGGTAACCGTAGTTCCCGGCATAGTTAG 1620 0.4827 MGQAASAAAIPCRRQANDSHRSTSKSRSTPFISTMIFDESHESPNGVIRAVPDYISELPDECLACIFQSLSSADRNRCSLVCRRWFQVEGQSRHRLSLNAQSDLLSVIPSLFSRFDSVTKLALKCDRRSVSIGDEALVLISQRCPNLTRLKLRGCRELMDAGMEVFAKNCKGLKKLSCGSCSFGAQGMNAVLNHCASIEELSVKRLRGITDVASVESIGPGVAASSLKTICLKELYNGQCFGPLILGSKNLRTLKIFRCSGDWDRLFQLLADRAPSIVEVHLERLQTSDVGLEAISNCSSLEVLHLVKTPECTDLGVTAIAERCRLLRKLHIDGWKTNRIGDEGLIAVAKYCPYLQELVLIGVNPTHASLEMLASNCLNLERLALCGSETVGDVEISCIATKCLALKKLCIKSCPVSDHGMEALASGCPNLLKVKVKKCKGVTSEGADLLRLCRESVAVNLDAGEKEHQDASANDGGAQENGIEFPSIPSQAAASATIASSSTGRSSSFKSRLGLLAGKSYIVCTLRRLSGGNRSSRHS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g1224 539 ProSiteProfiles F-box domain profile. 52 88 IPR001810 GO:0005515
Lele27g1224 539 MobiDBLite consensus disorder prediction 1 28 - -
Lele27g1224 539 Pfam Leucine Rich repeat 144 167 IPR001611 GO:0005515
Lele27g1224 539 SUPERFAMILY F-box domain 47 88 IPR036047 GO:0005515
Lele27g1224 539 FunFam F-box protein SKIP2 90 471 - -
Lele27g1224 539 SMART fbox_2 58 98 IPR001810 GO:0005515
Lele27g1224 539 SUPERFAMILY RNI-like 98 456 - -
Lele27g1224 539 PANTHER UNCHARACTERIZED 57 462 - -
Lele27g1224 539 SMART LRR_CC_2 377 402 IPR006553 -
Lele27g1224 539 SMART LRR_CC_2 324 351 IPR006553 -
Lele27g1224 539 SMART LRR_CC_2 195 221 IPR006553 -
Lele27g1224 539 SMART LRR_CC_2 298 323 IPR006553 -
Lele27g1224 539 SMART LRR_CC_2 428 452 IPR006553 -
Lele27g1224 539 SMART LRR_CC_2 144 169 IPR006553 -
Lele27g1224 539 SMART LRR_CC_2 170 194 IPR006553 -
Lele27g1224 539 SMART LRR_CC_2 403 427 IPR006553 -
Lele27g1224 539 FunFam F-box/LRR-repeat protein 3 isoform X1 54 94 - -
Lele27g1224 539 Gene3D - 54 90 - -
Lele27g1224 539 Gene3D Ribonuclease Inhibitor 91 477 IPR032675 -
Lele27g1224 539 Pfam F-box 57 94 IPR041567 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g1224 Lele-ChrLele27 19201031 19202650 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0852 25 5476062 5477681 Lele27g1224 27 19201031 19202650 hybridization
Lele26g0868 26 5554978 5556531 Lele27g1224 27 19201031 19202650 hybridization