Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0942 ATGGCAATCTCAGAAGAAGAAAATCAACTTCCATTTCCTCTAATCCCTAAAAATGGCCACAATACGCAGAATTTTTCCAATGACGACGATGAAGAAGACGACCCTGAGGAAGTCGAGGATGATGAAGACAAAGACCAACAGGATCTTCCTGCTCGAGTCCATGATGTGCTTATAAGGGGGAATACGAAAACCAAGGATTGGGTGATCGAGGCCGAGGTGGAGGAGATAAAGAAGGCCACAACTATGCAAGAGCTGGTACTAGCGGCCAAAATTGCCAATACGAAGCTTCATAGCCTCCAGATTTTTGATGCGGTCAATATTAAGCTTGAACCAGGACCGCCAGAGTTGGCTGGTACTGCCAATGTCATCATTGAGGTCTCGGAGATCGATAGCAAACCTTCTGGTGAAGTCGGCGTTTATTCAAAACCCTCGGCTAGTTCTTGGTCTCTTGAAGGTGCTCTAAAGTTCAAAAACTTGTTTGGCTATGGTGATCTATGGGATGGTTCTCTAGCATATGGTCCCAATCAAACTTCAGAGGTGAGTGTTGGGGTGTTTGTGCCTCGATTGAAAGGATTATTAACCCCCATTGTGGCAAGAGCGTTCATGCATTCCCAAGATTGGCAAGAGTATTCTTCATACAAAGAGCGATCTTCTGGCATGTCTCTTGGCTTATTCTCAACAAAACACCATGACTTAGTATACAATCTTGGATGGCGTACCATAACAGATCCATCACAAATGTCATCCAGATCTATTAGGAGGCAGATTGGACATGGTTTATTGTCATCTTTGAAATATACATTTAAGATTGACCAGAGGAACTCACCAGTTAGGCCTACAAAAGGATATGCTTTTCTTTCTACAACTCAATTAGGTGGCGTTGCACCAGATCACAGGAGCTTGCGGTTTCTGCGTCAGGAGTTTGATGTTCGATACGCCATTCCTTTTGGGTTTTTTCATACTGCACTCAACCTTGGAATCTCTGCTGGTGTCATTTTTCCATGGGGCCAAGGGTTCTTCAACAAGGCTTCTCCCCTGCCAGAAAGGTTTTTCTTGGGGGGTGATTTCTCTCCAGTTTGCACCCTAGGAGGGCCAACAACTTTATGGGGATTCAGGACAAGGGCATTAGGCCCCAGTGAACCACGAAGACAAAGTAGAAGTAGAGATGGAAATAATGATGACAATGTCGATTCCTCTAGAAGGGACTTTGTTGGAGGAGATCTTGCTGTTACTGCTTTTGCAGACCTCTCTTTTGATTTTCCATTTGGCTGGTTAAGAGAACGTGGAATCCATGGACATGTTTTTGCTGGTGCTGGGAATTCTGCCAAGTTAACTGAGTATGAGTACAGGAAGTTCTCTCCTAAAAATTTTTTGGATTCATTTCGAACATCCGTGGGATGTGGAATTGTTATTCCAACTAAAGTTTTTCGCCTAGAGGGTAACTTCTACTACATACTCAGGCAGCATGAGCATGATCGTGGAAAGACTGGTTTTAGGTTGAGCTTCTCGGTTCCTTCATAG 1521 0.4412 MAISEEENQLPFPLIPKNGHNTQNFSNDDDEEDDPEEVEDDEDKDQQDLPARVHDVLIRGNTKTKDWVIEAEVEEIKKATTMQELVLAAKIANTKLHSLQIFDAVNIKLEPGPPELAGTANVIIEVSEIDSKPSGEVGVYSKPSASSWSLEGALKFKNLFGYGDLWDGSLAYGPNQTSEVSVGVFVPRLKGLLTPIVARAFMHSQDWQEYSSYKERSSGMSLGLFSTKHHDLVYNLGWRTITDPSQMSSRSIRRQIGHGLLSSLKYTFKIDQRNSPVRPTKGYAFLSTTQLGGVAPDHRSLRFLRQEFDVRYAIPFGFFHTALNLGISAGVIFPWGQGFFNKASPLPERFFLGGDFSPVCTLGGPTTLWGFRTRALGPSEPRRQSRSRDGNNDDNVDSSRRDFVGGDLAVTAFADLSFDFPFGWLRERGIHGHVFAGAGNSAKLTEYEYRKFSPKNFLDSFRTSVGCGIVIPTKVFRLEGNFYYILRQHEHDRGKTGFRLSFSVPS 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0942 506 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 23 503 IPR039910 -
Lele27g0942 506 Gene3D membrane protein fhac 50 128 - -
Lele27g0942 506 MobiDBLite consensus disorder prediction 27 44 - -
Lele27g0942 506 FunFam Outer membrane OMP85 family protein 50 129 - -
Lele27g0942 506 FunFam Outer membrane OMP85 family protein 140 504 - -
Lele27g0942 506 Pfam Omp85 superfamily domain 158 502 IPR000184 GO:0019867
Lele27g0942 506 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 140 504 - -
Lele27g0942 506 MobiDBLite consensus disorder prediction 1 54 - -
Lele27g0942 506 MobiDBLite consensus disorder prediction 379 398 - -
Lele27g0942 506 MobiDBLite consensus disorder prediction 376 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0942 Lele-ChrLele27 17332425 17336420 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1138 25 7325209 7334174 Lele27g0942 27 17332425 17336420 CCT
Lele27g0942 27 17332425 17336420 Lele27g0942 27 17332425 17336420 ECH
Lele25g1138 25 7325209 7334174 Lele27g0942 27 17332425 17336420 hybridization
Lele26g1139 26 7321405 7325412 Lele27g0942 27 17332425 17336420 hybridization