Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele27g0558 ATGTGGAGCTCACGCTCTCTCTCTCCTCTGCTCACTCTGTTTCTTCTTCACTCGGTGGTAGCTCTTGTCTCTGCTCAGGGATCTACCAGAACCACTTGGAAGACACTAAACGGAGCTGCACCATTAGTCATAGCACGTGGGGGATTTTCGGGGATATTTCCTGATTCCAGCCTAGCTGCTTACAATTTGGCGCTAATAACCAGCGTACCAAATGTCATTTCATGGTGTGACGTGCAATTAACAAAAGATGGAGCTGGGATTTGTCTTCCAGATGTCAAACTTGACAATGCTACTGACATTTCTTCAATTTTTCAAAATAAATCCACCACTTACTTAGTTAATGGCGTACCAACCCGTGGATATTTTTCAGTGGATTACATGACAAAGGATCTATCTCAAGTTTTTTTGACTCAGGGAGTCTTTTCTCGAACTAACAAGTTTGACGGTAATGCATTTCCAATTTTTACTGTTGAGGAACTTGTTAAACAAGTTGCCCCGCCAATCTTGTGGTTGAACATTCAGCATGATATTTTCTACTCGCAACACAATCTCAGTATGAGAAACTTTGTACTTTCTGTTTCAAGAAAAGTAACGGTCAAATATATCTCATCACCTGAGGTGAATTTCCTGAGAGGTATAGTGGCACGCTTTAGCCCAAATATAACGAAACTGGTCTTCAGATTTATGGGACAGGATGACACAGAACCATCAACCAATCAGAGTTATGGCTCACTTCAAAAAAATCTTACATTTATCAAGACATTTGCTTCTGGAATTATGGTTCCCAAGAGTTACATATGGCCTGTAGATGATGGCTATCTACAGGCACCTACAACTTTGGTCTCAGATGCTCACAAAGCAGGACTGGAAGTTTTTGCATCAGATTTTACTAATGATATTCCAGTTAGCTATAATTACAGTTATGATCCTCTTGCTGAGTGTCTCCAGTTCATTGATAACGGTGACTTCTCTGTTGATGGTGTGCTGTCTGACTTTCCTATAACTCCATCTGAAGCTGTGGGTTGCTTTGCTCACCTACGTCCAAATGCTGCAAAAACAGTTAACATTTCGGTTATCTCAAAATTCGGGGCTAGTGGAGACTATCCTCCTTGTACTGACTTGGCATACAACAAGGCCATATCAGATGGTGTGGATGTTCTTGATTGTCCTGTTCAACTTTCAAAAGATGGAATACCATTTTGCCTAAGCTCCATAGATCTCATAGAGAGCTCAACAGTTGCTCAATCAAGTTTCAGCAGACTAGCCACATCTATTCCTGAGATCAAGTCTGGCAGTGGCATATTTTCATTCAGTTTGACATCGGATAACATTACTACCTTGACCCCCTCAATATTGAACCCATATGCAAAGTACACGCTGTTCAGGAATCCAAAAAATAAGAACGCCGGGAACTTTTTGACATTAGCAAATTTCTTGTCCTTGGCAAAAAAGCAGACTTCTCTGTCTGCTGTCTTGATCACTGTTGAGCATGCAGCCTATCTTGCAGGAAAGGTAGGACTAAATGCGATTGATGCAGTCCTTGCTGCTTTGAGCAAAGCTGGCTATGATAAGCAAGTGGCACAAAAAGTTTTGATTCAGTCCTCTGATAGCTCTGTACTAAAAGAATTCAAGGATAAATCTAAATACGAGCTTGTCTATTACATTGATAAGGATGTCAGTGATGCTGACAATGCAGTTGTTGAAGAGATCAAAGGCTTTGCGAATTCTGTGGTTGTTGCAAAGTCATCCGTGTTTCCTGAGAACTCTGCCTTCATGACTGGCTCTACCAAAATTGTGCCAAAGCTAAAATCTTATAACCTCTCTGTCTATGTAGAAACATTTAACAATGAGTTTGTATCACAGGCCTGGGATTTCTTCTCTGATGGAACTGTGGAGATCAACTCATTTGTTCAGGGAGCTGGTATTGATGGCGTCGTCACAAGCTTCCCAAAGACCGCTAATAGATACAGTAGGAATCCTTGTTTGTCAGCTAATCCTACACCTCCTTATATGCAACCCGCTAAAGCTGGCGATCTTTTACAACTTGTTACCAAAGATTACCTACCACCGGCCGAGGCTCCTCTCTCGCCTCTGACAGAATCTGAAGTGTCGGAGTCACCTCTACCTCCTGTTACGAATACAATGGCCAAAGCTCCAGCCCCTGCCTCCGGAACAGGGACTCCACCTGGCAACGCACAGGCCAAGGTTAACATCTGCTTCTTTTTGTCCACTCTAGCTGTGCTTGTGTCTTTCCTTCTGCTCCATTAA 2268 0.4237 MWSSRSLSPLLTLFLLHSVVALVSAQGSTRTTWKTLNGAAPLVIARGGFSGIFPDSSLAAYNLALITSVPNVISWCDVQLTKDGAGICLPDVKLDNATDISSIFQNKSTTYLVNGVPTRGYFSVDYMTKDLSQVFLTQGVFSRTNKFDGNAFPIFTVEELVKQVAPPILWLNIQHDIFYSQHNLSMRNFVLSVSRKVTVKYISSPEVNFLRGIVARFSPNITKLVFRFMGQDDTEPSTNQSYGSLQKNLTFIKTFASGIMVPKSYIWPVDDGYLQAPTTLVSDAHKAGLEVFASDFTNDIPVSYNYSYDPLAECLQFIDNGDFSVDGVLSDFPITPSEAVGCFAHLRPNAAKTVNISVISKFGASGDYPPCTDLAYNKAISDGVDVLDCPVQLSKDGIPFCLSSIDLIESSTVAQSSFSRLATSIPEIKSGSGIFSFSLTSDNITTLTPSILNPYAKYTLFRNPKNKNAGNFLTLANFLSLAKKQTSLSAVLITVEHAAYLAGKVGLNAIDAVLAALSKAGYDKQVAQKVLIQSSDSSVLKEFKDKSKYELVYYIDKDVSDADNAVVEEIKGFANSVVVAKSSVFPENSAFMTGSTKIVPKLKSYNLSVYVETFNNEFVSQAWDFFSDGTVEINSFVQGAGIDGVVTSFPKTANRYSRNPCLSANPTPPYMQPAKAGDLLQLVTKDYLPPAEAPLSPLTESEVSESPLPPVTNTMAKAPAPASGTGTPPGNAQAKVNICFFLSTLAVLVSFLLLH 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele27g0558 755 ProSiteProfiles GP-PDE domain profile. 41 340 IPR030395 GO:0006629|GO:0008081
Lele27g0558 755 SUPERFAMILY PLC-like phosphodiesterases 41 338 IPR017946 GO:0006629|GO:0008081
Lele27g0558 755 ProSiteProfiles GP-PDE domain profile. 356 657 IPR030395 GO:0006629|GO:0008081
Lele27g0558 755 SUPERFAMILY PLC-like phosphodiesterases 358 656 IPR017946 GO:0006629|GO:0008081
Lele27g0558 755 Pfam Glycerophosphoryl diester phosphodiesterase family 48 333 IPR030395 GO:0006629|GO:0008081
Lele27g0558 755 Pfam Glycerophosphoryl diester phosphodiesterase family 363 651 IPR030395 GO:0006629|GO:0008081
Lele27g0558 755 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 12 748 - -
Lele27g0558 755 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 39 339 - -
Lele27g0558 755 CDD GDPD_SHV3_repeat_2 358 656 - -
Lele27g0558 755 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 354 657 - -
Lele27g0558 755 MobiDBLite consensus disorder prediction 694 728 - -
Lele27g0558 755 CDD GDPD_SHV3_repeat_1 41 339 - -
Lele27g0558 755 Gene3D Phosphatidylinositol (PI) phosphodiesterase 39 339 IPR017946 GO:0006629|GO:0008081
Lele27g0558 755 Gene3D Phosphatidylinositol (PI) phosphodiesterase 357 656 IPR017946 GO:0006629|GO:0008081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele27g0558 Lele-ChrLele27 13219718 13226789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele27g0558 10 754 Receptor kinase-like Gene Family AT4G26690 54.388 0.0 828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1524 25 11924502 11931463 Lele27g0558 27 13219718 13226789 hybridization
Lele26g1545 26 11770199 11777586 Lele27g0558 27 13219718 13226789 hybridization