Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1727 ATGCAGCAATTACTCAACTATTTCACTTACAAGGCTGCAAGGACTGTTCTTCATCAGTTGTACGAGATGAACCCCACCCAATATAGGTGGTTCTATGAGTTTGTAGCAACAAACAAGCCAGGAGATGGGAAACGTTTTATCAGATCCCTTGGCAAGCCCGTAGTTTCTTCAATCCTCACTCCTGTTGCAAAAGCTGCTTCTGACATTGTCAATGTTGTTTTCATCGTTATTGGTATTGTTGTTCCTAGTTGCTATGACAATCAAAAATGTAATCATGCTGAGATATATCAAGAAATCTCAGATGAAAACTTGGAGCTGATGAGGTAA 327 0.3976 MQQLLNYFTYKAARTVLHQLYEMNPTQYRWFYEFVATNKPGDGKRFIRSLGKPVVSSILTPVAKAASDIVNVVFIVIGIVVPSCYDNQKCNHAEIYQEISDENLELMR 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1727 108 PANTHER CHAPERONIN-LIKE RBCX PROTEIN 1, CHLOROPLASTIC 2 108 IPR003435 GO:0044183|GO:0110102
Lele25g1727 108 Pfam RbcX protein 2 50 IPR003435 GO:0044183|GO:0110102
Lele25g1727 108 Gene3D - 1 108 IPR038052 -
Lele25g1727 108 SUPERFAMILY RbcX-like 2 53 IPR038052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1727 Lele-ChrLele25 24946092 24948452 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele02g1547 02 19505152 19505832 Lele25g1727 25 24946092 24948452 CCT
Lele03g1292 03 7753181 7753870 Lele25g1727 25 24946092 24948452 CCT
Lele04g1537 04 20359246 20359926 Lele25g1727 25 24946092 24948452 CCT
Lele25g1727 25 24946092 24948452 Lele28g1741 28 20306857 20309723 hybridization