Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1317 ATGGCGCCAACATTTCTGTCTCTGTGCTTGCTCCTATGCTTTGGCGTCCGCCTGTCCTTTTCTGGACAATCTAGCTCCATGGAATCAGTTCCCGATCTTCAGAAGTCTATGTACAAGGAAGTCGATGGATATCCTTGTGTGCGGCTACTAAGTCTTTCTGGACCTATCGGTTGCTCCAATCCTGGACGAGACAAGGTTGTTGCCCCTATAGTGACATTTAAAAATGCTAATCAGCTGTCAAAGTCATCTGCTATATTGGTGTCATTGGATGAGTTTGAAAGTCTCTTAACAAGAATATCTGGTGATTCAAGCTTTGCAAGTAAGGTTGCTGGTGTGCTTGTTGAGTCAGGAGCTGGAGCGCAGAATAATTTGAGGGGATTCTCTCCAGAACAAAAGTTTCCACAAGCTGAATATGCTCCTTACCAAAACAGTGGATATCAATGGAATCCAACTGGTTCTGGTATCATGTGGAAATCCTACAATTTTCCCGTTTTCCTACTCTCAGATAGCAGCACAGAGACTCTTCATGAGGTTGCAACCAAGAATGAGAACAACAGGAAAGGTTATACAGCTAATGTGGCTGAGTTTGATCTGGTGATGCAGGTAACGAAATCTGGAAATCATGATTCAGAGTCTTGTTTGAAAGAAGCTACTTGCCTCCCTCTAGGTGGATACAGTGTCTGGTCATCTCTTCCACCTATCAACATTTCATCCTTTGAACATCCTAAGCCCATAATATTGACAATGGCATCAATGGATTCTGCTTCATTTTTTCGGGACAAGAACCTAGGGGCAGAATCTCCTGTTTCTGGCTTGATTGCGTTGCTGGCAGCGGTTGATGCTCTCTCTTATCTGAATGGTCTTGGTGACGTTACTAAACAGCTTGTTTTTGTAGTTTTCACTGGCGAGGCATGGGGTTACCTTGGAAGTCGAAGATTTTTGCAAGAGCTTGACATGCATTCTGATGCTGTCCATGGACTTAATAACTCACAAATTGAAATGGTTATTGAAATTGGTTCTGTTGGAAAGGGTTTCAATGAAGGTGCTCATAGATTTTTTGCTCATACATTAGGGGTATCCTCTGCTACAAATGAGACATTGTCTGCCTTGAAGCATGCGCAAGAGTCATTGCTACCTGAGAACATTAAGATCACATCTCCCAGTGACTCAAATCCAGGCATACCTCCATCATCCTTGATGGCATTTTTGAAAAAGAATCCTGCAAATTCCGGGATTGTCTTGCAAGATTTTGATGCTGTCTTTACCAACAAGTTCTACCATAGTCACCTTGATGATTTATCAAACGTAAACTCATCAGCTATAGTTGCAGCTGCTTCTCTTGTTGCCCGAACTCTCTACATTCTTGGTAGTGGAAAGGAAGATGTCAGAGATTCAGCTTTAACTGCAATAAATGTAAATGCGTCACTTGTTGAAGAACTTGTGGGTTGCTTATTGACCTGTGATCCTGGACTTTCTTGTGAATTAGTGAAGAGCTATATTTCACCTTCATCAGCCTGTCATAACCATTATGTTGGTGTTATCATGGATGAACCTTCATCTGCATCATATCCAGAATACATTAACGATGTTCCCAGGTTTATCTGGAATTTTTTATCTGACAAAACCTCTATTTCAAAGGAAAACGGTAGAACCAGTTGTCAAGGAGATTGCAAAAGTAGGGATGAAGTTTGCATTAAAGCAGAGACTGACGGGAAGGGGGTTTGTGTTACCTCTAGAACCAGGTACGTCCCAGCATATTCAACACGATTAAAATATGAATCAGGAGTATGGAATGTTTTGCCCCCTAATTCATCTGACAACATGGGAGCTGTGGACCCGGTCTGGACAGAAAGCAATTGGAACACAATTGGGATTCAAGTGTACACCATCCAAGATGCGGCTTATGATCGTCTTGTTCTGGTTGGGGGTATCACCATTACAATCTTAGCATACGTTGCAATAGTGATTATAAGAGCTCTTATCACCAAAACCATGAAGAGTGATTGA 2007 0.42 MAPTFLSLCLLLCFGVRLSFSGQSSSMESVPDLQKSMYKEVDGYPCVRLLSLSGPIGCSNPGRDKVVAPIVTFKNANQLSKSSAILVSLDEFESLLTRISGDSSFASKVAGVLVESGAGAQNNLRGFSPEQKFPQAEYAPYQNSGYQWNPTGSGIMWKSYNFPVFLLSDSSTETLHEVATKNENNRKGYTANVAEFDLVMQVTKSGNHDSESCLKEATCLPLGGYSVWSSLPPINISSFEHPKPIILTMASMDSASFFRDKNLGAESPVSGLIALLAAVDALSYLNGLGDVTKQLVFVVFTGEAWGYLGSRRFLQELDMHSDAVHGLNNSQIEMVIEIGSVGKGFNEGAHRFFAHTLGVSSATNETLSALKHAQESLLPENIKITSPSDSNPGIPPSSLMAFLKKNPANSGIVLQDFDAVFTNKFYHSHLDDLSNVNSSAIVAAASLVARTLYILGSGKEDVRDSALTAINVNASLVEELVGCLLTCDPGLSCELVKSYISPSSACHNHYVGVIMDEPSSASYPEYINDVPRFIWNFLSDKTSISKENGRTSCQGDCKSRDEVCIKAETDGKGVCVTSRTRYVPAYSTRLKYESGVWNVLPPNSSDNMGAVDPVWTESNWNTIGIQVYTIQDAAYDRLVLVGGITITILAYVAIVIIRALITKTMKSD 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1317 668 CDD M28_Nicastrin 41 621 - -
Lele25g1317 668 SUPERFAMILY Zn-dependent exopeptidases 215 438 - -
Lele25g1317 668 PANTHER NICASTRIN 9 666 IPR008710 GO:0016020|GO:0016485
Lele25g1317 668 Pfam Nicastrin 244 453 - -
Lele25g1317 668 Pfam Nicastrin small lobe 45 201 IPR041084 -
Lele25g1317 668 FunFam Nicastrin 172 468 - -
Lele25g1317 668 Gene3D Zn peptidases 169 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1317 Lele-ChrLele25 9002248 9014001 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1317 25 9002248 9014001 Lele27g0771 27 15758644 15774864 hybridization
Lele25g1317 25 9002248 9014001 Lele28g1318 28 8938727 8950880 hybridization