Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1313 ATGTCTCTGCGGCTGGTAGCAGCCAATTTACTCAGAAAGTTTCGCTTTCCTTCTCACAATGCTTCTACTTCTGTAGTAACCTCTAATGCCTTGCCCATCTCACTTCCTGGCAAAAGTATTACTTTTCATTGGCATCGAACTGGTGCATATGGTTGGAGGACAGGTTTTAGTGGCCCTTGTCTATGGATGGTGATATATGGACATCTTGCATTAATTATTGGCATTAATGCCAACCCTGTGTTTGCAAAAGATGCATCAACAGAAGCAGTTTTTGATAGTGACACTGAAAAGGATGACATAACTGGATTACAAAAAATTGAGGATGGCTCTGTAGTATCAAATATACACACATCAAAATGGAGGGTCTTTACTGATAAAGGGAGAGAATTTTTTCTTCAGGGAAAAATAGATGAAGCTGAAAAGCTCTTCCTTTCTGCAGTACAAGAAGCTAGAGAAGGTTTTGGCCAGAGAGACCCACATGTTGCATCTGCATGCAACAATCTGGCTGAGCTGTACAGAGTCAAGAAGTCTTTTGACAAAGCAGAGCCACTGTATTTAGAAGCTATCAGCATATTGGAGGAATCATTTGGACCTGAAGATATAAGAGTGGGAGCTGCTGCTCATAACCTTGGGCAGTTATTCCTTGGACAGCGGAAGTTGGAAGAAGCTCATGATTACTACGCGGTAAATTGTTATATAAAAAGGCGAGTTTTGGGATATAACCATCCAGACGTTTCTGATACAATGTATCATCTGGGAGTGGTCCTGTATCTTCAAGGAAAGGAAAGGGATGCTGAGGCTTTTATTCAGGACTCTATAAGAATGCTAGAGGAAGGTGGTGAAGGGGAGTCCTTTATATGCACTAAAAGACTTCGATACCTCTCTCAGATATACATGAAATCACATCGACATGCTGAAGCGGAGATGATTCAAAGAAAGATTCTACATAAAATGGAACTATCAAATGGTTGGAATTCCCTGGACACTATTGCTGTGGCTGAGAGTTTAGCTCTGACTCTGCAAGCATCTAATAATTTTAAAGATTCGCGAGAGCTTCTTGAAAGATGTCTTAATGCACGGAAACTCATACTTCCTCACGACGATATTCAGATTGGTGCTAACCTGCTTCATCTGGCAAGGGGAGTGGTGCTCAACAGCAGCCAACTGCACAAGTGGGATGCTTCTGGAGAAGCTGAGCTTGATAGGGCAAAGGATCATTTGAATAATTCCATAAGGATTGCACATCAAGTTTTAAATAAATTATTGAAACAAAAAGTCAACACAAAATATTCCAGTTCACTAGGACGTTCTACAAAGGAAAGACAAGCGGCATTAATCATACTGTTGCAATCACTCAGTACTTTGGCGTCATTGGAGTTAGCTAAGCAAGAATTGCTGGAAACTCAGGAAGAGCATACGAATCTTGAAGCTCGGAAGGCACTTGTTCAATGTGTTTACACTTATAGGGAGTATGTATCTGAGAAGTCAGTTGCTGATTCCCCTGAAATAAAGAACGAGTATCTTTCATGTTTAAAGCGCGCTCAAAACTTGCTTGGTGGTAAATTTGCTGAGGAGCCAACCAATTAA 1587 0.4096 MSLRLVAANLLRKFRFPSHNASTSVVTSNALPISLPGKSITFHWHRTGAYGWRTGFSGPCLWMVIYGHLALIIGINANPVFAKDASTEAVFDSDTEKDDITGLQKIEDGSVVSNIHTSKWRVFTDKGREFFLQGKIDEAEKLFLSAVQEAREGFGQRDPHVASACNNLAELYRVKKSFDKAEPLYLEAISILEESFGPEDIRVGAAAHNLGQLFLGQRKLEEAHDYYAVNCYIKRRVLGYNHPDVSDTMYHLGVVLYLQGKERDAEAFIQDSIRMLEEGGEGESFICTKRLRYLSQIYMKSHRHAEAEMIQRKILHKMELSNGWNSLDTIAVAESLALTLQASNNFKDSRELLERCLNARKLILPHDDIQIGANLLHLARGVVLNSSQLHKWDASGEAELDRAKDHLNNSIRIAHQVLNKLLKQKVNTKYSSSLGRSTKERQAALIILLQSLSTLASLELAKQELLETQEEHTNLEARKALVQCVYTYREYVSEKSVADSPEIKNEYLSCLKRAQNLLGGKFAEEPTN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1313 528 Gene3D Tetratricopeptide repeat domain 283 445 IPR011990 GO:0005515
Lele25g1313 528 Coils Coil 455 478 - -
Lele25g1313 528 Pfam Tetratricopeptide repeat 163 227 - -
Lele25g1313 528 Pfam Tetratricopeptide repeat 331 366 - -
Lele25g1313 528 Gene3D Tetratricopeptide repeat domain 122 282 IPR011990 GO:0005515
Lele25g1313 528 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 521 - -
Lele25g1313 528 SUPERFAMILY TPR-like 241 359 IPR011990 GO:0005515
Lele25g1313 528 SUPERFAMILY TPR-like 116 228 IPR011990 GO:0005515
Lele25g1313 528 SMART tpr_5 246 279 IPR019734 GO:0005515
Lele25g1313 528 SMART tpr_5 162 195 IPR019734 GO:0005515
Lele25g1313 528 SMART tpr_5 120 153 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1313 Lele-ChrLele25 8958021 8968419 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1313 25 8958021 8968419 Lele27g0775 27 15810833 15821374 hybridization