Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0443 ATGGCTGTTTCAACCAGCTTCTCTGGTGCCAAATTGGAGGCCTTGTTGCTCAAATCTTCTTCCCCTGCGTCCAGGGCCTCCGCTGCTAACCGTTTATCGGATTTTGGCAAACCCGGTGCAATTAAAAAGACCCTGATCCAGAGAGGAATAATTCGCTGTGAAGCTGCTGTTCCTGAGTTGTTCATCAAAGCCGATGATCCCAGTAATGGTAACAGCGTCTCTGCTCTCGAGCAGCTCAAGACTTCTGCTGTTGACAGGTATACAAAGGAAAGGAGTAGCATTGTGGTCATTGGGCTCAGTGTGCACACTACACCTGTGGAAATGCGAGAAAAGCTCGCCATTCCAGAAGCAGAATGGCCTCAAGCCATTGGAGAGCTGTGTGGTCTGAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGCAACAGAATGGAGATATATGTTGTTGCATTGTCCCAGCACCGTGGCGTCAAAGAGGTCACTGAATGGATGTCAAAGAAAAGTGGGGTCCCTGTTTCGGATCTTTGCCAGCATCGGTTCTTGCTTTACAACAAAGATGCTACACAGCATCTTTTTGAAGTATCTGCAGGTCTCGACTCTCTTGTATTGGGAGAAGGTCAAATCCTTGCGCAGGTTAAGCAGGTAGTTAAAGTTGGACAGGGCATTAATGGCTTTGGGAGAAACATTAGTGGGCTGTTCAAAAATGCAATTACTGTGGGGAAGAGGGTTAGAACTGAAACTAATATTGCCGCTGGTGCAGTTTCTGTAAGTTCAGCTGCTGTTGAATTGGCCTTGATGAAGCTACCTGAAGCCTCACATGATATGGCCAGGATGTTGGTTATTGGAGCTGGCAAGATGGGAAAACTTGTAGTCAAACATTTGGTGGCCAAAGGTTGTACTAAGATGGTGGTTGTTAATAGAACTGAGGAGAGAGTTGCCGCCATCCGTGAAGAAATTAAGGATGTTGAAATTATATATAAACCACTTTCAGAAATGCTCTCCTGTGCTGGTCAATCAGATGTCGTTTTTACCAGCACTGCATCAGAAAGCCCCTTGTTCTTGAAAGATCATGTGCAGGACCTGCCTCCTGCAAGTCAACATGTTGGAGGACTTCGTCTTTTTGTTGATATCTCTGTTCCTCGCAACGTAGATTCTTGTGTCTCTGATGTTGATTCTGCGCGAGTTTACAATGTTGATGACCTTAAAGAGGTTGTGGCTGCTAACAAAGAAGATAGGCTAAGAAAAGCAATGGAGGCTCAGGCAATCATTGCCGAGGAATCAAAACAATTCGAAGCTTGGAGAGACTCTCTGGAAACTGTTCCTACCATCAAGAAATTGAGGGCTTATGCCGAAAGAATCAGGGCTGCCGAGCTCGAGAAATGCATAAGTAAGATGGGAGACGATATCCCAAAGAAGACAAGGAGAGCTGTGGATGATCTTAGTCGGGGCATTGTGAATAAGTTGCTGCATGGTCCAATGCAACACCTGAGATGTGATGGGAGCGACAGCCGGACTCTTAGTGAGACCCTTGAGAACATGCATGCTTTAAATAGAATGTTCAGTCTTGAGACAGAAGTATCAATTTTGGAGCAGAAGATTCGAGCCAAGGTGGAACAAAATCAGAAGTAA 1629 0.4555 MAVSTSFSGAKLEALLLKSSSPASRASAANRLSDFGKPGAIKKTLIQRGIIRCEAAVPELFIKADDPSNGNSVSALEQLKTSAVDRYTKERSSIVVIGLSVHTTPVEMREKLAIPEAEWPQAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKKSGVPVSDLCQHRFLLYNKDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGINGFGRNISGLFKNAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPEASHDMARMLVIGAGKMGKLVVKHLVAKGCTKMVVVNRTEERVAAIREEIKDVEIIYKPLSEMLSCAGQSDVVFTSTASESPLFLKDHVQDLPPASQHVGGLRLFVDISVPRNVDSCVSDVDSARVYNVDDLKEVVAANKEDRLRKAMEAQAIIAEESKQFEAWRDSLETVPTIKKLRAYAERIRAAELEKCISKMGDDIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEVSILEQKIRAKVEQNQK 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0443 542 TIGRFAM hemA: glutamyl-tRNA reductase 94 502 IPR000343 GO:0008883|GO:0033014|GO:0050661
Lele25g0443 542 Coils Coil 305 325 - -
Lele25g0443 542 FunFam Glutamyl-tRNA reductase 252 411 - -
Lele25g0443 542 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 418 522 IPR015896 GO:0008883|GO:0033014|GO:0050661
Lele25g0443 542 Gene3D - 92 252 IPR036343 GO:0008883|GO:0033014|GO:0050661
Lele25g0443 542 Gene3D - 253 405 - -
Lele25g0443 542 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 93 249 IPR036343 GO:0008883|GO:0033014|GO:0050661
Lele25g0443 542 FunFam Glutamyl-tRNA reductase 93 252 - -
Lele25g0443 542 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 97 247 IPR015895 GO:0008883|GO:0033014|GO:0050661
Lele25g0443 542 ProSitePatterns Glutamyl-tRNA reductase signature. 190 213 IPR018214 GO:0008883
Lele25g0443 542 Pfam Shikimate / quinate 5-dehydrogenase 262 404 IPR006151 -
Lele25g0443 542 Hamap Glutamyl-tRNA reductase [hemA]. 93 520 IPR000343 GO:0008883|GO:0033014|GO:0050661
Lele25g0443 542 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 2 539 - -
Lele25g0443 542 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 416 502 IPR036453 GO:0008883|GO:0033014|GO:0050661
Lele25g0443 542 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 252 412 IPR036291 -
Lele25g0443 542 CDD NAD_bind_Glutamyl_tRNA_reduct 94 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0443 Lele-ChrLele25 2779405 2781913 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0443 25 2779405 2781913 Lele27g1641 27 21930633 21933435 hybridization
Lele25g0443 25 2779405 2781913 Lele28g0450 28 2860095 2865313 hybridization