Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0316 ATGATCTCGACGGCGAGATTACAGCAGCGGGTAGCAGGGGAGATCGGCCAGATCGACGGGACGCCGGGAATTCTGTTATACGAGTTCAGGAGATCGAAGGTGGCGATGGAGGAGCTAAGAGGAGAATTAGGGAGAAGAGTATCGGAGGGGGTGGTGGTGGAGTGGGAAACAGAGAGTGGAATCAGGGAGAGAGTGGAGAATTTGAGAGGATGTTTTGGGAATCTGAGATCGGGAGCAGAGAACATTATTGGACAGCTCGACGATTTCTTTGACGAGATCGTTGAAGGCAGGAAGAAGCTTTTGGACTTTTGCAGTAATAGGAAGGCAAACAGAAGCTTTTGCCTGATTCCATTTCACTCTGAAAGCAACGGAGATGATGATTATGGAGTGAAAGATAAAGGGAGACGAAGGAATCTCCGAGCAAAACGTGGCAAGCGTTCCCATCAAATGTCAAATCCTGGCATTGCAAACTGGGAGTGGAAGGCATATGTCTCCATCCAATTCCTCATGGCAGCTTCAGCTCCACAATATCTCCATTATTCAAAAGGCACCGAAAACAATGTATCAAACTGGACCTCGAGGCTGTTGAGGAATGAGGTTAAAGTTGTCCATGTCAAGAGGGTACAGGTGAATTCGTTGCTACATCATGCAACACACGATCATTCTAGGAGAGTTATAGCCATAGTGCTCCTGTCCGTCCGACGGCGAAGGCGGCGGAGAATGGAAAACGCCGACGTTTTCTTGGGCTTACATGATTTCCTGGAGCGCATGCGCCAACCATCTGCCGCCGATTTCGTCAAAGCAATTAAGAGCTTTATTGTATCATTCTCGAATAATGCTACAGATCCAGAGAGGGATAGTGCCGCTGTACAGCAATTCTTTACTAACATGGAAGCAGCTTTCAGGGCTCATCCACTTTGGGTTGGGTGCTCTGAGGAAGAGCTGGAGAGTGCCGGTGAAGGGCTGGAGAAGTATGTCATGACGAAGTTATTTACCCGTGTATTTGCTTCACTTCCAGATGACGTAAAACTTGATGAGCATCTTTCTAAAAAGATGGCTTTGATTCAACAGTTCATTCGACCAGAAAATTTGGATGTCAAGTCAGATTTTCAGAATGAAACATCATGGTTGCTTGCTCAGAAGGAGTTACAGAAGATCAACATGTACAAGGCACCAAGAGACAAACTAGTGTGTATACTGAATTGTTGCAAGGTTATCAACAACTTACTGATTAATGCTTCTGTTGCTTCAAATGCGAATCTTCCAGGAGCTGATGAATTTCTTCCTGTGCTGATTTACGTTACCGTAAAGGCAAACCCTCCACAACTCTACTCTAACCTACTATACATACAACGGTTTAGACGTCAATCACGATTGGTTGCAGAAGCAGCTTATTATTTCACGAACATGCTCTCTGCTGAGTCCTTCATAAGAAATATTGATGCAAAAGCCATTTCAATGGATGAAGCTGAGTTTGAGAGGAACATGGAATCTGCTCGTGCTGTTCTCTCTGATCTGTCAACTGATTTGCAAGATCATCCTAGATTACCTGATCAAAATTCTGAAGACCATTCAAGAGGAGAACCAGTAAAGGGGTTTGCATTACAAACCACATCATCCGAATCGAAATCTGAAAATGAGAAAGTAACTTTTGCAGATCAGTTACCAATAACAAAGATTCCATCCCTCTCAGATTTGGAGAATAAAGGAGCAAGTATGCTTTTGAAGGAGGACGGGCTGAATGAAGTTTTCAGGGAGTATCCATATTTGTTTGCTCGTGTTGGTGATCTAACAGTCGGTGATGTGGAAGACCTACTAAATAATTACAAACAACTTGTTATCAAGTATGTATGTCTTTCCAAGGGCTTAGGTGTTTCTCCTACATCTCATCCTCCATCTGATACACAAAACAATGTACAAAACCTTGTTGAAACCAAAATAGATTCTTCAGATAGCAGAACTGCAGATGCAGATGAAAAGACAGGAAAATCTCCGGATAGCATGGAGGATATTTCTGATGGAGTATCACTTTCTAAAGAGAAAAGTCCTGAATGCGATCTGCCCCAGGATGAGGCAGTTGCACCTCAGGCTGGAGGCAGTTTAGAATCCTCTAACTGA 2118 0.4386 MISTARLQQRVAGEIGQIDGTPGILLYEFRRSKVAMEELRGELGRRVSEGVVVEWETESGIRERVENLRGCFGNLRSGAENIIGQLDDFFDEIVEGRKKLLDFCSNRKANRSFCLIPFHSESNGDDDYGVKDKGRRRNLRAKRGKRSHQMSNPGIANWEWKAYVSIQFLMAASAPQYLHYSKGTENNVSNWTSRLLRNEVKVVHVKRVQVNSLLHHATHDHSRRVIAIVLLSVRRRRRRRMENADVFLGLHDFLERMRQPSAADFVKAIKSFIVSFSNNATDPERDSAAVQQFFTNMEAAFRAHPLWVGCSEEELESAGEGLEKYVMTKLFTRVFASLPDDVKLDEHLSKKMALIQQFIRPENLDVKSDFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLINASVASNANLPGADEFLPVLIYVTVKANPPQLYSNLLYIQRFRRQSRLVAEAAYYFTNMLSAESFIRNIDAKAISMDEAEFERNMESARAVLSDLSTDLQDHPRLPDQNSEDHSRGEPVKGFALQTTSSESKSENEKVTFADQLPITKIPSLSDLENKGASMLLKEDGLNEVFREYPYLFARVGDLTVGDVEDLLNNYKQLVIKYVCLSKGLGVSPTSHPPSDTQNNVQNLVETKIDSSDSRTADADEKTGKSPDSMEDISDGVSLSKEKSPECDLPQDEAVAPQAGGSLESSN 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0316 705 ProSiteProfiles VPS9 domain profile. 342 486 IPR003123 -
Lele25g0316 705 Gene3D VPS9 domain 339 504 IPR037191 -
Lele25g0316 705 Gene3D - 257 337 - -
Lele25g0316 705 Pfam Domain of unknown function (DUF5601) 267 331 IPR041545 -
Lele25g0316 705 MobiDBLite consensus disorder prediction 510 529 - -
Lele25g0316 705 MobiDBLite consensus disorder prediction 649 687 - -
Lele25g0316 705 PANTHER RAB GDP/GTP EXCHANGE FACTOR 236 616 IPR045046 GO:0005085|GO:0016192
Lele25g0316 705 SMART vps9_2 375 494 IPR003123 -
Lele25g0316 705 MobiDBLite consensus disorder prediction 645 705 - -
Lele25g0316 705 FunFam Vacuolar protein sorting-associated protein 9A 339 505 - -
Lele25g0316 705 SUPERFAMILY VPS9 domain 251 497 IPR037191 -
Lele25g0316 705 MobiDBLite consensus disorder prediction 511 529 - -
Lele25g0316 705 Pfam Vacuolar sorting protein 9 (VPS9) domain 378 481 IPR003123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0316 Lele-ChrLele25 1896241 1904528 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0316 25 1896241 1904528 Lele27g1770 27 22831237 22839410 hybridization
Lele25g0316 25 1896241 1904528 Lele28g0327 28 1978485 1979779 hybridization