Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1917 ATGAAAAGAGCACAGAACAGGATGATATTCAAGTTGTACCTCGTATCATTGCGAGAACACAGAACCGTATCGTTGATGAAGGTTGATCAGCTTAATCAATTACGCGACATTTTTAGGCGCTTCGACATGGATTCCGACGGCAGCCTCACCATCCTCGAGCTCGCCGCCCTTCTCCGCTCCCTCGGCCTCAAGCCCTCCGGCGACCAAATCCACGATTTACTCGCCGCCATGGACTCCAACGGCAACGGCTCCGTCGAATTCGATGAGTTGCTCTCTGCCATTCTTCCCGACATGAACGAGCAGGTCTTGTTGAATCAAGCCGAACTTGTCGACCTTTTCAAAACCTTCGACCGCGACGGCAACGGCTACATATCGGCCGTGGAGTTAGCCGGAAAGATGGCCAAAATGGGTCAGCCATTGACCTATCGAGAGCTCTCGGAGATGATCCAAGAGGCAGACACCGACGGCGACGGCGTAATTAGCTTCAACGAGTTCGCCACTGTCATTGCTAGGTCGGCTTCCGAATCATTAGGCCTTGCATTGTTATCTGGAGGATGA 558 0.5251 MKRAQNRMIFKLYLVSLREHRTVSLMKVDQLNQLRDIFRRFDMDSDGSLTILELAALLRSLGLKPSGDQIHDLLAAMDSNGNGSVEFDELLSAILPDMNEQVLLNQAELVDLFKTFDRDGNGYISAVELAGKMAKMGQPLTYRELSEMIQEADTDGDGVISFNEFATVIARSASESLGLALLSGG 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1917 185 ProSitePatterns EF-hand calcium-binding domain. 153 165 IPR018247 -
Lele24g1917 185 Pfam EF-hand domain pair 32 93 IPR002048 GO:0005509
Lele24g1917 185 Pfam EF-hand domain pair 109 168 IPR002048 GO:0005509
Lele24g1917 185 Gene3D - 102 180 - -
Lele24g1917 185 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Lele24g1917 185 CDD EFh 33 94 IPR002048 GO:0005509
Lele24g1917 185 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Lele24g1917 185 ProSiteProfiles EF-hand calcium-binding domain profile. 65 100 IPR002048 GO:0005509
Lele24g1917 185 SMART efh_1 69 97 IPR002048 GO:0005509
Lele24g1917 185 SMART efh_1 144 172 IPR002048 GO:0005509
Lele24g1917 185 SMART efh_1 108 136 IPR002048 GO:0005509
Lele24g1917 185 SMART efh_1 33 61 IPR002048 GO:0005509
Lele24g1917 185 ProSiteProfiles EF-hand calcium-binding domain profile. 29 64 IPR002048 GO:0005509
Lele24g1917 185 PANTHER CALCIUM BINDING PROTEIN 106 167 - -
Lele24g1917 185 SUPERFAMILY EF-hand 26 170 IPR011992 -
Lele24g1917 185 FunFam Probable calcium-binding protein CML15 18 99 - -
Lele24g1917 185 Gene3D - 15 101 - -
Lele24g1917 185 ProSiteProfiles EF-hand calcium-binding domain profile. 140 175 IPR002048 GO:0005509
Lele24g1917 185 ProSitePatterns EF-hand calcium-binding domain. 42 54 IPR018247 -
Lele24g1917 185 CDD EFh 108 170 IPR002048 GO:0005509
Lele24g1917 185 ProSitePatterns EF-hand calcium-binding domain. 78 90 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1917 Lele-ChrLele24 23839778 23840875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1917 29 183 EF-hand Containing Proteins AT1G18530 74.194 2.86e-83 241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0012 23 75141 75539 Lele24g1917 24 23839778 23840875 ECH
Lele24g1917 24 23839778 23840875 Lele24g1917 24 23839778 23840875 ECH