Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1647 ATGGAAACAGAAGAGGGGACCCAGCAGCCACAGCTAGTGCTATCTCACAAGCTCTTCCTTCTCAGACATGGAGATGTGGAAGGCATTGAGAAGGTCCGGCTTAAAGATGAGGTGTTTGCGTTTGTCAAAGAAAATGATATGCTCCCTTTATATGAAACCCTAATCGCTGATTCAGTTTTGGACACGGATCAAAGTGTTCTGGATTTGATGCGTGCTAAGATAGATGAGGAGCTCAAGAAGCTTGACGAAAAAATTACCGATGCTGAAGAAAACTTAGGTGAGAGTGAAGTTCGAGAGGCTCACTTGGCAAAATCTCTGTTCTTCATCAAGATCGGTGACAAGGAGAAAGCCTTTGAACATCTCAAGTTAACAGAAGGCAAGACAGTTGCAGTTGGCCAGAAGATGGACCTGGTGTTTCATACATTGCAGCTTGGGTTTTTTGACATGGATTTCGATCTCATTTCCAAAAGCATTGACAAAGCTAAAAACTTGTTTGAGGAAGGTGGTGATTGGGAAAGAAAGAATCGGCTGAAAGTCTATGAAGGCCTGTACTGCATGTCCACGCGAAATTTCAAGAAGGCTGCCAATTTGTTTTTGGATTCTATCTCAACTTTCACGACTTACGAACTTTTCCCCTATGACACCTTTATATTTTACACAGTTTTGACCAGCGTTATATCATTGGATAGAGTTTCCCTGAAGCAGAAGGTAGTGGATGCTCCCGAGATCTTGACTGTGATCGGCAAAGTTCCCTACCTTTCAGAATTCTTAAACTCCCTATATGATTGTCGGTACAAGTCTTTTTTCTCTGCATTCGCTAGGATAACGGAGCAAATCAAGTTGGACCGCTATTTGCATCCACACTTTAGATATTACATGAGGGAGGTCAGAACTGTTGTTTATTCACAGTTTTTGGAGTCTTACAAGAGTGTTACAATCCAGGCGATGGCGAAAGCATTTGGAGTGACTGTGGATTTCATTGATCTGGAGCTTTCGCGTTTTATTGCTGCTGGGAAACTTCATTGTAAGATTGACAAGGTTGCTGGAGTTCTTGAAACTAACCGCCCCGATGCGAAGAATGCTCTTTACCAAGCAACTATCAAGCAAGGGGACTTCCTATTGAACCGGATTCAAAAGTTGTCCCGGGTGATTGATCTTTAA 1161 0.4264 METEEGTQQPQLVLSHKLFLLRHGDVEGIEKVRLKDEVFAFVKENDMLPLYETLIADSVLDTDQSVLDLMRAKIDEELKKLDEKITDAEENLGESEVREAHLAKSLFFIKIGDKEKAFEHLKLTEGKTVAVGQKMDLVFHTLQLGFFDMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSVISLDRVSLKQKVVDAPEILTVIGKVPYLSEFLNSLYDCRYKSFFSAFARITEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIQAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1647 386 PANTHER 26S PROTESOME SUBUNIT 6 10 386 IPR019585 -
Lele24g1647 386 Gene3D - 10 337 - -
Lele24g1647 386 FunFam 26S proteasome regulatory subunit N7 11 337 - -
Lele24g1647 386 ProSiteProfiles PCI domain profile. 190 358 IPR000717 -
Lele24g1647 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 287 370 - -
Lele24g1647 386 Coils Coil 71 98 - -
Lele24g1647 386 SMART PINT_4 287 370 IPR000717 -
Lele24g1647 386 Pfam 26S proteasome subunit RPN7 63 236 IPR045135 -
Lele24g1647 386 Pfam PCI domain 254 354 IPR000717 -
Lele24g1647 386 SUPERFAMILY "Winged helix" DNA-binding domain 282 363 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1647 Lele-ChrLele24 21970909 21974080 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1647 24 21970909 21974080 Lele24g1647 24 21970909 21974080 ECH
Lele21g1702 21 24922876 24925363 Lele24g1647 24 21970909 21974080 hybridization
Lele22g1682 22 22279327 22284311 Lele24g1647 24 21970909 21974080 hybridization