Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1682 ATGGCGAGTCCCGCACCCTACTACTGTGTTGAAACAGGATCTAAACACGCTGTTACAAAAATGAAGGGTTTCAAACCTGACGTGTCATTAGAAGATGGAATCTCATTAGCTATAAAAGCCATTACTTGGGCCGTCATCCCAGGATTTGCTTACTCCCATTGCAGGCGAATAATACTATTTTGCGGCTGCTCCTCCGGCGAGGAAAAGAAGACTCAGAAGCGTACCGCAGTGAACAAAGAACAAGCGGCCATGGAAGCAGAGGAGGGGACCCAGCAGCCACAGCTAGTGCTAGCTCACAAGCTCTTCCTTCTCAGATATGGTGATGTGGAAGGCATTGAGGAGGTCCGGCTTAAAGATGAGGTGTTTGCGTTTGTCAAAGAAAACGATATGCTCCCTTTATACGAAACCCTAGTCGCTGATTCAGTTTTGGCCATGGATCAGAGCGTTCTGGATTTGATGCGTGCTAAGATAGACGAGGAGCTCAAGAAGCTTGACGAAAAAATTACCGATGCTGAAGAAAACTTAGGTGAGAGCGAAGTTCGAGAGGCTCACCTGGCAAAATCTTTGTTCTTCATCAAGATCGGTGACAAGGAGAAAGCCTTGGAACATCTCAAGTTAACTGAAGGCAAGACAGTTGCAGTTGGCCAGAAGATGGACCTGGTGTTTCATACATTGCAGCTTGGGTTTTTTGACATGGACTTCGATCTCATTTCCAAAAGCATCGACAAAGCTAAAAACTTGTTTGAGGAAGGTGGTGATTGGGAAAGAAAGAATCGGCTGAAAGTCTATGAAGGCCTGTACTGCATGTCCACGCGAAATTTCAAGAAGGCTGCCAATTTGTTTTTGGATTCTATCTCAACTTTCACGACTTACGAACTTTTCCCCTATGACACCTTTATATTTTACACAGTTTTGACCAGCATTATATCATTGGATAGAGTTTCCCTGAAGCAGAAGGTAGTGGATGCTCCCGAGATCTTGACTGTGATTGGCAAAGTTCCATACCTTTCGGAATTCTTAAATTCCCTATATGATTGTCGGTACAAGTCTTTTTTCTCTGCATTCGCTGGGATAACGGAGCAAATCAAGTTGGACCGCTATTTGCATCCACACTTTCGATATTACATGAGGGAGGTCAGAACTGTTGTTTATTCACAGTTTTTGGAGTCTTACAAGAGTGTCACAATCGAGGCGATGGCGAAAGCATTTGGAGTGACTGTGGATTTCATTGATCTGGAGCTTTCGCGTTTTATTGCAGCTGGGAAACTTCATTGTAGGATTGACAAGGTTGCTGGAGTTCTTGAAACTAACCGCCCCGATGCGAAGAATGCTCTTTACCAAGCAACTATCAAGCAAGGGGACTTCCTATTGAACCGGATTCAAAAGTTGTCCCGTGTGATTGATCTTTAA 1410 0.4433 MASPAPYYCVETGSKHAVTKMKGFKPDVSLEDGISLAIKAITWAVIPGFAYSHCRRIILFCGCSSGEEKKTQKRTAVNKEQAAMEAEEGTQQPQLVLAHKLFLLRYGDVEGIEEVRLKDEVFAFVKENDMLPLYETLVADSVLAMDQSVLDLMRAKIDEELKKLDEKITDAEENLGESEVREAHLAKSLFFIKIGDKEKALEHLKLTEGKTVAVGQKMDLVFHTLQLGFFDMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAANLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKVPYLSEFLNSLYDCRYKSFFSAFAGITEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFIAAGKLHCRIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1682 469 Coils Coil 154 181 - -
Lele22g1682 469 PANTHER 26S PROTESOME SUBUNIT 6 85 469 IPR019585 -
Lele22g1682 469 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 370 453 - -
Lele22g1682 469 SMART PINT_4 370 453 IPR000717 -
Lele22g1682 469 FunFam 26S proteasome regulatory subunit N7 94 420 - -
Lele22g1682 469 Gene3D - 86 420 - -
Lele22g1682 469 ProSiteProfiles PCI domain profile. 273 441 IPR000717 -
Lele22g1682 469 Pfam PCI domain 337 437 IPR000717 -
Lele22g1682 469 Pfam 26S proteasome subunit RPN7 146 319 IPR045135 -
Lele22g1682 469 SUPERFAMILY "Winged helix" DNA-binding domain 365 446 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1682 Lele-ChrLele22 22279327 22284311 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1682 22 22279327 22284311 Lele22g1682 22 22279327 22284311 ECH
Lele22g1682 22 22279327 22284311 Lele23g0307 23 2144734 2151875 hybridization
Lele22g1682 22 22279327 22284311 Lele24g1647 24 21970909 21974080 hybridization