Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1306 ATGAAGTGTGTCTCCGTGATCTCAGTCTGTTTCCTTCTTCTTTTGGGTATTCAGAGTGTGACGTCTAAAAATATATCTGAGAATGAGATAGGCCTAAGGCAAGCAAGCGTCCCACCAAGAGGTTGGGATTCCTATGATTCCTTTTCCTGGACAATTTCCGAAGAAGAATTCTTACAGAGTGCAGAAGTCATCTCCCAGCGTCTCCATGCTCATGGATACGAGTATGTTGTAGTGGATTACCTTTGGTATAGAAGGAAAGTTGAGGGTGCTTATGCCGATTCTCTTGGATTTGATGTGATTGATGAATGGGGAAGGATGATCCCTGATCCACAAAGATGGCCTTCTTCTAAAGGTGGGAAAGGGTTCAAAGAAGTGGCAGATAAAGTACATAGCATGGGTTTGAAGTTTGGGATTCATGTTATGAGAGGGATAAGTACTCAAGCAGTCAATGCAAACACCCCTATCATTGATCCAAGGAAGGGAGTCCCATATACAGAATCCGGTAAAGTGTGGCATGCAACAGACATAGCAATCCCAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTAAATACAAAGCTCGGGGCTGGAAGAGCCTTCTTGAGGTCCCTCTATGAGCAGTATGCTGCATGGGGTGTTGATTATGTGAAACATGACTGCGTGTTTGGGGACGACTTAGATTTGAATGAAATAAGATATGTTTCAGAGATTCTCAGGGCTCTTGATCGCCCCATTGTATACTCTCTTTCCCCCGGAACCAGTGTGACACCAGCAATGGCCAAGGATGTCAGTGGGCTAGTTAACTTATATCGCATAACAGGAGATGACTGGGATACATGGGGTGATGTTGTGGCTCATTTTGATGTGTCAAGGGATTTTTCTACTGCTAATATGATAGGAGCGAAGGGTTTGAAGGGATATTCATGGCCTGATTTGGATATGCTACCATTGGGATGGTTAACAGATCCAGGTTCAAATGAAGGCCCACACAGGTATGGTCGCCTTAATCTAGAAGAGCAAAAAACTCAGATGACTTTATGGGCTATGGCAAAGTCTCCTCTCATGTATGGAGGGGATGTGCGGAAGCTTGATCAAATGACTTATAATCTCATCACAAATCCTACTCTTCTGGAGATTAATTCTTTTAGCTCAAATAATATGGAGTTTCGATATATCACAAGCATGATGAATATGAAGATTCAAGGACAAGATCTTGCCGAGCAAATTAGAGGATCTAAGAGAAGTAGTCAAACACCAAATACTCATTTAATTGGTCTCACTGGCTGTACTGAGTCAAAGGCAGTTGGTTGGTCAATTGAAAGCCTTATTAAAGAAGATGTTGAAAGAATCTGTTGGACAAGGAGCTCAGTAAACAGGCATCAGGCACCTTTCTGTGTGCATAAGAGAGAAATTCGTGTCGCATTAGAAAAGAGTACGAATCAAGAAGACTATAGAAGAAAACATCATTTAGTTGCTGCCAACACGAAGCAACTTTGTCTTGAAGCTTCTCCTAAAAGAAAGCTTACTTCTAAAGAATTTAAAAGAGGCTCATTTTCTCCTTGCAGATGGGATGCAAATCAGATGTGGCAATTGAACCCTAATGGGACCCTAGTAAATAGTTATTCCAGCCTGTGTGCCACAGTAGATTCTGCTAAAGCTAAAACTCATTCTCTTCATGGCACTCGCTCTTGGATTGCGAAGGGAAGACGAGGAGAAGTCTATGTTGCTTTCTTCAACTTTAATGAGCAGAAGACAGTGATATCTGCAAAGACATCAGACCTGGCCAAGGTAATACCTGGCCACTATGATGCCTGTAAGTGCAGGGAAGTGTGGAGTGGAAAGGTAATCGGCACAATTCATGGAACGCTGTCAGCTAAAGTGGAAAGGCATGGCTGTGCACTGCTTGTCATTTATTGCCACTAA 1932 0.4281 MKCVSVISVCFLLLLGIQSVTSKNISENEIGLRQASVPPRGWDSYDSFSWTISEEEFLQSAEVISQRLHAHGYEYVVVDYLWYRRKVEGAYADSLGFDVIDEWGRMIPDPQRWPSSKGGKGFKEVADKVHSMGLKFGIHVMRGISTQAVNANTPIIDPRKGVPYTESGKVWHATDIAIPERACAWMPHGFMSVNTKLGAGRAFLRSLYEQYAAWGVDYVKHDCVFGDDLDLNEIRYVSEILRALDRPIVYSLSPGTSVTPAMAKDVSGLVNLYRITGDDWDTWGDVVAHFDVSRDFSTANMIGAKGLKGYSWPDLDMLPLGWLTDPGSNEGPHRYGRLNLEEQKTQMTLWAMAKSPLMYGGDVRKLDQMTYNLITNPTLLEINSFSSNNMEFRYITSMMNMKIQGQDLAEQIRGSKRSSQTPNTHLIGLTGCTESKAVGWSIESLIKEDVERICWTRSSVNRHQAPFCVHKREIRVALEKSTNQEDYRRKHHLVAANTKQLCLEASPKRKLTSKEFKRGSFSPCRWDANQMWQLNPNGTLVNSYSSLCATVDSAKAKTHSLHGTRSWIAKGRRGEVYVAFFNFNEQKTVISAKTSDLAKVIPGHYDACKCREVWSGKVIGTIHGTLSAKVERHGCALLVIYCH 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1306 643 Gene3D Aldolase class I 28 386 IPR013785 -
Lele24g1306 643 Pfam Alpha galactosidase C-terminal beta sandwich domain 565 640 IPR041233 -
Lele24g1306 643 CDD GH27 38 383 IPR002241 GO:0004553|GO:0005975
Lele24g1306 643 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Lele24g1306 643 PRINTS Glycosyl hydrolase family 27 signature 341 362 IPR002241 GO:0004553|GO:0005975
Lele24g1306 643 PRINTS Glycosyl hydrolase family 27 signature 32 51 IPR002241 GO:0004553|GO:0005975
Lele24g1306 643 SUPERFAMILY Ricin B-like lectins 497 556 IPR035992 -
Lele24g1306 643 CDD RICIN 483 561 IPR000772 -
Lele24g1306 643 SUPERFAMILY Glycosyl hydrolase domain 562 641 - -
Lele24g1306 643 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 6 641 IPR002241 GO:0004553|GO:0005975
Lele24g1306 643 Pfam Alpha galactosidase A 50 146 IPR002241 GO:0004553|GO:0005975
Lele24g1306 643 Pfam Alpha galactosidase A 209 383 IPR002241 GO:0004553|GO:0005975
Lele24g1306 643 Gene3D - 557 642 IPR013780 -
Lele24g1306 643 SUPERFAMILY (Trans)glycosidases 35 383 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1306 Lele-ChrLele24 19059447 19065058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1306 2 477 Glycoside Hydrolase AT3G26380 64.496 0.0 638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g1306 24 19059447 19065058 Lele24g1306 24 19059447 19065058 ECH
Lele21g1351 21 21979506 21984004 Lele24g1306 24 19059447 19065058 hybridization
Lele22g1347 22 19253424 19259089 Lele24g1306 24 19059447 19065058 hybridization