Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1940 ATGGCTCCTCCCAAAGTTCTCATGGTCGCGGAGAAGCCTAGTATCTCTCTTTCTATTGCCTCTGTTCTCTCCCGCGGTCAGATGTCTACAAGAAAAGGAAGCACAGAAGTTCACGAGTTTGAGGGGATGTTTCTTGGATCCCGTGTTCACTTCAAAGTAACATCAGTTATTGGGCATATATTTAGTGTAGATTTTCCCGCTAAATATCAGGATTGGGCAGCTACAGATCCATCAGATCTTTTTCAAGCTCCAGTAATAAAGAACGAATCAAACCCAAAGGCCCATATATGTAGACATCTAAATCAAGAAGCTCGTGGATGTCATTATTTGGTATTGTGGTTAGACTGTGATCGTGAAGGAGAAAATATATGTTTTGAAGTTATAGAATCAACTAGCTTCAATGTAAATGAAGCTCGGAAGAGGATTTTTCGTGCTCGGTTTTCTTCTGTTACTGAGAAGGATATTCTGGAGGCTCTGGATAAACTTGTGGAACCCAACAGAGATGAGGCACTGGCTGTGGATGCTAGGCAGGAGATTGATTTAAAAGTTGGAGTTGCCTTTACTCGATTTCAGACAAGTTATTTCCAGGGAAAATACGGGAACCTTGATGCCAGAGTTATATCCTATGGGCCATGTCAAACTCCTACCTTAGGCTTTTGTGTGCAGCGTTATTTGCAAATAAATACCTTCAAGCCAGAAAAGTTTTGGACTCTGCACCCATACATAATACACAATGGGTACGAAATTCAGCTAGAATGGAACCGGGGCAGATTATTTGACATGAATATTGCTGTTATGTTTCAAAAGCTAGTAACTGAAAATGGACTTTTGGAAGTTACTGATATATCTGAAGAACAGAAAACCAAAAGCCGCCCTGTTGGTCTGAATACAGTCAATCTTCTGAAGGTTGCTTCAAGTGCTTTAGGATTTGGACCTCAGATGGCGATGCAACTAGCTGAGCGCTTGTATACTCAAGGTTTCCTCAGCTATCCGCGCACAGAAAGCACAGCATACCCACCTTCATTTGACTTTCAGGGTGCACTCTCTGCACAAGCAAATAATCCAATATGGGGTCATTATGTACAGGGGCTACTCACCAATGGTTATAACAAACCTCGATCAGGAACAGATGTAGGTGATCACCCTCCTATCACCCCAATGCTGTCAACTTCTGAGGATGTGGTAGGCAGTGATGCGTGGAAGCTATACCAATATGTCTGTCAACACTTCATGGGGACAGTGTCCCCTGATTGCAAGTATACAAGGAGAAAGGTAGAATTTTCAGTTGGTGGAGAGTCCTTTCATTGTACCGGGACGCATGCTACTGTTAAAGGATTTACAACTATTATGCCTTGGTTAGCAGTAAATGATAAAAGTATTCCATCCTTTGCAAAGGGGCAGAAAATTGATGTGTCAAAAATGGAGCTGTATGAGGGGACCACCTCACCTCCAGATTATCTAAGTGAAAGTGAGCTGATTTCCCTTATGGAGAAGAACGGGATTGGCACGGATGCATCAATTCCTGTACATATCAACAACATCTGTGAACGGAATTATGTGCAGGTACAAGCAGGAAGGAAGCTTGTCCCAACTCCGTTAGGTGTGAGTTTAATAAGAGGTTATCAGTCAATTGATCCGGACCTCTGCCTACCTGATATCCGTAGCTTTATTGAGCAGCAAATTACTCTTGTTGCTCGGGGTCAGATAGATCATTCTCGTGTTGTGCAGCATGTACTACAACAATTCAAGCAGAAGTTTAGTTACTTTGTTAAGAAGATTGAAAATATGGATGCACTATTTGAAGCGCAATTCTCCGCACTTACTGATTCAGGGCGTACTCTTAGTAAATGTGGTAAATGCTTGCGGTATATGAAGTTCATTTCTTCTCAGCCACCACGATTGTATTGTAATACATGTGAGGAGGTTTATTATCTTCCACAGAAGGGAACAATTAAGCTTTACAAGGAACTGGTTTGTCCTTTGGACAACTTTGAGCTTTTGATCTGCTCCATGCCTGGCCCAGAGGGCAAATCATTCCCACTCTGCCCATACTGCTACAGCAATCCTCCATTTGAGGGCATTGAAACACTCATCAATACAGCTAAAATTGGTGCTTCTGGCAAGCTAGGGAAGGGAGCTGGCATGCCATGCATCCTCTGTCCCCATCCCACTTGCCCAAACTCTCTGGTTTCTCAAGGGGTCTGTGCTTGCCCTGAGTGTAGTGGGACACTTTTCTTGGACCCGGTAAGCGCTCCCAAGTGGCGACTTTATTGCAATATGTGCAATTGCCTTGTTCTTCTTCCTCAAGGTGCTCATAGAATCTCCACAACTCGGGAACAATGCCCTGATTGTGACTCTACAATCATAGAAGTGGACTTCCACAAGAAAACAACCCCTCTGGAAGATGGAGCTACGCTGCACCGTGGTTGTGTTCTTTGTGATGAGTTGCTTCATTCCCTTGTGGAGATGAAACATGGCAAGAGTTTCAGTTCAAGAGGGAGAGGGAGAGGTGGGGGAAGGGGAAGAGGAAGGGGAAGGGGAGGTCGTGGTAGAGGAAAAATGGTTGACCCAAAAATGAGTTTCCGAGACTTTTAA 2595 0.4374 MAPPKVLMVAEKPSISLSIASVLSRGQMSTRKGSTEVHEFEGMFLGSRVHFKVTSVIGHIFSVDFPAKYQDWAATDPSDLFQAPVIKNESNPKAHICRHLNQEARGCHYLVLWLDCDREGENICFEVIESTSFNVNEARKRIFRARFSSVTEKDILEALDKLVEPNRDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDARVISYGPCQTPTLGFCVQRYLQINTFKPEKFWTLHPYIIHNGYEIQLEWNRGRLFDMNIAVMFQKLVTENGLLEVTDISEEQKTKSRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFLSYPRTESTAYPPSFDFQGALSAQANNPIWGHYVQGLLTNGYNKPRSGTDVGDHPPITPMLSTSEDVVGSDAWKLYQYVCQHFMGTVSPDCKYTRRKVEFSVGGESFHCTGTHATVKGFTTIMPWLAVNDKSIPSFAKGQKIDVSKMELYEGTTSPPDYLSESELISLMEKNGIGTDASIPVHINNICERNYVQVQAGRKLVPTPLGVSLIRGYQSIDPDLCLPDIRSFIEQQITLVARGQIDHSRVVQHVLQQFKQKFSYFVKKIENMDALFEAQFSALTDSGRTLSKCGKCLRYMKFISSQPPRLYCNTCEEVYYLPQKGTIKLYKELVCPLDNFELLICSMPGPEGKSFPLCPYCYSNPPFEGIETLINTAKIGASGKLGKGAGMPCILCPHPTCPNSLVSQGVCACPECSGTLFLDPVSAPKWRLYCNMCNCLVLLPQGAHRISTTREQCPDCDSTIIEVDFHKKTTPLEDGATLHRGCVLCDELLHSLVEMKHGKSFSSRGRGRGGGRGRGRGRGGRGRGKMVDPKMSFRDF 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1940 864 Gene3D Topoisomerase I, domain 2 172 586 IPR013824 -
Lele23g1940 864 MobiDBLite consensus disorder prediction 827 864 - -
Lele23g1940 864 Gene3D Topoisomerase I, domain 3 231 484 IPR013825 -
Lele23g1940 864 PANTHER PROKARYOTIC DNA TOPOISOMERASE 5 825 IPR000380 GO:0003677|GO:0003917|GO:0006265
Lele23g1940 864 CDD TOPRIM_TopoIA_TopoIII 5 162 IPR034144 -
Lele23g1940 864 FunFam DNA topoisomerase 291 416 - -
Lele23g1940 864 Gene3D Topoisomerase I, domain 4 291 416 IPR013826 -
Lele23g1940 864 SUPERFAMILY Prokaryotic type I DNA topoisomerase 5 625 IPR023405 -
Lele23g1940 864 FunFam DNA topoisomerase 3 165 - -
Lele23g1940 864 CDD TOP1Ac 168 586 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lele23g1940 864 PRINTS Prokaryotic DNA topoisomerase I signature 110 123 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lele23g1940 864 PRINTS Prokaryotic DNA topoisomerase I signature 325 334 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lele23g1940 864 PRINTS Prokaryotic DNA topoisomerase I signature 402 418 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lele23g1940 864 PRINTS Prokaryotic DNA topoisomerase I signature 500 514 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lele23g1940 864 PRINTS Prokaryotic DNA topoisomerase I signature 207 225 IPR013497 GO:0003677|GO:0003916|GO:0006265
Lele23g1940 864 MobiDBLite consensus disorder prediction 849 864 - -
Lele23g1940 864 SMART toprim5 5 136 IPR006171 -
Lele23g1940 864 ProSiteProfiles Toprim domain profile. 5 148 IPR006171 -
Lele23g1940 864 SMART topIaneu2 283 538 IPR003602 GO:0003677|GO:0003916|GO:0006265
Lele23g1940 864 SMART topIban2 141 237 IPR003601 GO:0003677|GO:0003916|GO:0006265
Lele23g1940 864 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 320 334 IPR023406 GO:0003917
Lele23g1940 864 Gene3D - 2 165 - -
Lele23g1940 864 Pfam Toprim domain 6 149 IPR006171 -
Lele23g1940 864 Pfam DNA topoisomerase 165 576 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1940 Lele-ChrLele23 22442255 22449952 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0110 21 709490 717075 Lele23g1940 23 22442255 22449952 hybridization
Lele22g0116 22 664670 675215 Lele23g1940 23 22442255 22449952 hybridization