LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele21g0110	ATGGCTCCTCCCAAAGTTCTCATGGTCGCGGAGAAGCCTAGTATCTCTCTTTCTATTGCCTCTGTTCTCTCCCGCGGTCAGATGTCTACAAGAAAAGGAAGCACAGAAGTTCACGAGTTTGAGGGGATGTTTCTTGGATCCCGTGTTCACTTCAAAGTAACATCAGTTATTGGGCATATATTTAGTGTAGATTTTCCCGCTAAATATCAGGATTGGGCAGCTACAGATCCATCAGATCTTTTTCAAGCCCCAGTAATAAAGAACGAATCAAACCCAAAGGCCCATATATGTAGACATCTAAATCAAGAAGCTCGTGGATGTCATTATTTGGTATTGTGGTTAGACTGTGATCGTGAAGGAGAAAATATATGTTTTGAAGTTATAGAATCAACTAGCTTCAATGTAAATGAAGCTCGGAAGAGGATTTTTCGTGCTCGGTTTTCTTCTGTTACTGAGAAGGATATTCTGAAGGCTCTGGATAAACTTGTGGAACCCAACAGAGATGAGGCACTGGCTGTGGATGCTAGGCAGGAGATTGATTTAAAAGTTGGAGTTGCCTTTACTCGATTTCAGACTAGTTATTTCCAGGGAAAATACGGGAACCTTGATGCCAGAGTTATATCCTATGGGCCATGTCAAACTCCTACATTAGGCTTTTGTGTGCAGCGGTATTTGCAAATAAATACCTTCAAGCCAGAAAAGTTTTGGACTCTTCACCCATACATAATACACAATGGGTACGAAATTCAGCTAGAATGGAACCGGGGCAGATTATTTGACATGAATATTGCTGTTATGTTTCAAAAGCTAGTAACTGAAAATGGACTTTTGGAAGTTACTGATATATCTGAAGAACCGAAAACCAAAAGCCGCCCAGTTGGTCTGAATACAGTCAATCTTCTGAAGGTTGCTTCAAGTGCTTTAGGATTTGGACCTCAGATGGCGATGCAACTAGCTGAGCGCTTGTATACTCAAGGTTTCCTCAGCTATCCGCGCACAGAAAGCACAGCGTACCCGCCTTCATTTGACTTTCAGGGTGCACTATCTGCACAAGCAAATAATCCAATATGGGGTCATTATGTACAGGGGCTACTCACCAATGGTTATCACAAACCTCGATCAGGAACAGATGTAGGTGATCACCCTCCTATCACCCCAATGCTGTCAACTTCTGAGGATGTGGTAGGCAGTGATGCATGGAAGCTATACCAATATGTCTGTCAACACTTCATGGGGACAGTGTCCCCTGATTGCAAGTATACAAGGAGAAAGGTAGAATTTTCAGTTGGTGGAGAGTCCTTTCATTGTACCGGGACGCATGCTACTGTTAAAGGATTTACAACCATTATGCCTTGGTTAGCAGTAAATGATAAAAGTATTCCATCCTTTGCAAAGGGGCAGAAAATTGATGTGTCAAAAATGGAGCTGTATGAGGGGACCACCTCACCTCCAGATTATCTAAGTGAAAGTGAGCTGATTTCCCTTATGGAGAACAACGGGATTGGTACAGATGCATCAATTCCTGTACATATCAACAACATCTGTGAACGGAATTATGTGCAGGTACAAGCAGGAAGGAAGCTTGTCCCAACTCCGTTAGGTGTGAGTTTAATAAGAGGTTATCAGTCAATTGATCCGGACCTCTGCCTACCTGATATCCGTAGCTTCATTGAGCAGCAAATTAGTCTTGTCGCTCGGGGTCAGATAGATCATTCTCGTGTTGTGCAGCATGTACTACAACAATTCAAGCAGAAGTTTAGTTACTTTGTTAAGAAGATTGAAAATATGGATGCACTATTTGAAGCGCAATTCTCCGCACTTACTGATTCAGGGCGTACTCTTAGTAAATGTGGTAAATGCTTGCGGTATATGAAGTTCATTTCTTCTCAGCCACCACGATTGTATTGTAATACATGCGAGGAGGTTTATTATCTTCCACAGAAGGGAACAATTAAGCTTTACAAGGAACTGGTTTGTCCTTTGGACAACTTTGAGCTTTTGATCTGTTCCATGCCTGGCCCAGAGGGCAAATCATTCCCACTCTGCCCATACTGCTACAGCAATCCTCCATTTGAGGGCATTGAAACACTCATCAATACAGCTAAAATTGGTGCTTCTGGCAAGCTAGGGAAGGGAGCTGGCATGCCATGCATCCTCTGTCCCCATCCCACTTGCCCAAACTCACTGGTTTCTCAAGGGGTCTGTGCTTGCCCTGAGTGTAGTGGGACACTTTTCTTGGACCCGGTAAGCGCTCCCAAGTGGCGACTTTATTGTAATATGTGCAATTGCCTTGTTCTTCTTCCTCAAGGTGCTCATAGAATCTCCACAACTCGGGAACAATGCCCTGATTGTGACTCTACAATCATAGAAGTGGACTTCCACAAGAAAACAACCCCTCTAGAAGATGGAGCTACGCTGCACCGTGGTTGTGTTCTTTGTGATGAGTTGCTTCATTCCCTTGTGGAGATGAAACATGGCAAGAGTTTCAGTTCAAGAGGGAGAGGGAGAGGGAGAGGTGGGGGAAGGGGAAGAGGAAGGGGAAGGGGAGGTCATGGTAGAGGAAAAATGGTTGATCCAAAAATGAGTTTCCGAGACTTTTAA	2601	0.4371	MAPPKVLMVAEKPSISLSIASVLSRGQMSTRKGSTEVHEFEGMFLGSRVHFKVTSVIGHIFSVDFPAKYQDWAATDPSDLFQAPVIKNESNPKAHICRHLNQEARGCHYLVLWLDCDREGENICFEVIESTSFNVNEARKRIFRARFSSVTEKDILKALDKLVEPNRDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDARVISYGPCQTPTLGFCVQRYLQINTFKPEKFWTLHPYIIHNGYEIQLEWNRGRLFDMNIAVMFQKLVTENGLLEVTDISEEPKTKSRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFLSYPRTESTAYPPSFDFQGALSAQANNPIWGHYVQGLLTNGYHKPRSGTDVGDHPPITPMLSTSEDVVGSDAWKLYQYVCQHFMGTVSPDCKYTRRKVEFSVGGESFHCTGTHATVKGFTTIMPWLAVNDKSIPSFAKGQKIDVSKMELYEGTTSPPDYLSESELISLMENNGIGTDASIPVHINNICERNYVQVQAGRKLVPTPLGVSLIRGYQSIDPDLCLPDIRSFIEQQISLVARGQIDHSRVVQHVLQQFKQKFSYFVKKIENMDALFEAQFSALTDSGRTLSKCGKCLRYMKFISSQPPRLYCNTCEEVYYLPQKGTIKLYKELVCPLDNFELLICSMPGPEGKSFPLCPYCYSNPPFEGIETLINTAKIGASGKLGKGAGMPCILCPHPTCPNSLVSQGVCACPECSGTLFLDPVSAPKWRLYCNMCNCLVLLPQGAHRISTTREQCPDCDSTIIEVDFHKKTTPLEDGATLHRGCVLCDELLHSLVEMKHGKSFSSRGRGRGRGGGRGRGRGRGGHGRGKMVDPKMSFRDF	866

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lele21g0110	866	MobiDBLite	consensus disorder prediction	851	866	-	-
Lele21g0110	866	CDD	TOPRIM_TopoIA_TopoIII	5	162	IPR034144	-
Lele21g0110	866	SMART	topIaneu2	283	538	IPR003602	GO:0003677\|GO:0003916\|GO:0006265
Lele21g0110	866	Gene3D	Topoisomerase I, domain 2	172	586	IPR013824	-
Lele21g0110	866	SUPERFAMILY	Prokaryotic type I DNA topoisomerase	5	625	IPR023405	-
Lele21g0110	866	CDD	TOP1Ac	168	586	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Lele21g0110	866	PRINTS	Prokaryotic DNA topoisomerase I signature	402	418	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Lele21g0110	866	PRINTS	Prokaryotic DNA topoisomerase I signature	500	514	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Lele21g0110	866	PRINTS	Prokaryotic DNA topoisomerase I signature	325	334	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Lele21g0110	866	PRINTS	Prokaryotic DNA topoisomerase I signature	110	123	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Lele21g0110	866	PRINTS	Prokaryotic DNA topoisomerase I signature	207	225	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Lele21g0110	866	FunFam	DNA topoisomerase	3	165	-	-
Lele21g0110	866	Gene3D	Topoisomerase I, domain 3	231	484	IPR013825	-
Lele21g0110	866	FunFam	DNA topoisomerase	291	416	-	-
Lele21g0110	866	PANTHER	PROKARYOTIC DNA TOPOISOMERASE	5	825	IPR000380	GO:0003677\|GO:0003917\|GO:0006265
Lele21g0110	866	Pfam	DNA topoisomerase	165	576	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Lele21g0110	866	SMART	toprim5	5	136	IPR006171	-
Lele21g0110	866	ProSiteProfiles	Toprim domain profile.	5	148	IPR006171	-
Lele21g0110	866	ProSitePatterns	Prokaryotic DNA topoisomerase I active site.	320	334	IPR023406	GO:0003917
Lele21g0110	866	Gene3D	Topoisomerase I, domain 4	291	416	IPR013826	-
Lele21g0110	866	SMART	topIban2	141	237	IPR003601	GO:0003677\|GO:0003916\|GO:0006265
Lele21g0110	866	Pfam	Toprim domain	6	149	IPR006171	-
Lele21g0110	866	MobiDBLite	consensus disorder prediction	827	866	-	-
Lele21g0110	866	Gene3D	-	2	165	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele21g0110	Lele-ChrLele21	709490	717075	Dispersed/Wgd

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele21g0110	21	709490	717075	Lele23g1940	23	22442255	22449952	hybridization