Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1067 ATGAAAGGAGACAAGAACAGTAAGAAGACAAGTTGTAGAAAAGTAGATGTCTGTCGTTTTCCGGCACAGAATCATTCTTATTCCATCACCGAACAACGATCCTCTCTCGCTCATTTCTTGATCTCGGACTCTGACTCTGTTCTGTTCTCTCTCATGGCGGAGATTGAGCTCAAAACAGCACCTGCTGATTTTCGTTTTCCTACAACCAATCAAACCAGACATTGTTTTACTCGTTATGTTGAGTTTCATAGGTGTGTGGCAGCAAAGGGTGAAGGCGCGGGTGACTGTGAGAGGTTTGCTAAATATTATCGTTCCCTTTGCCCTGGTGAATGGGTTGAAAAGTGGAATGACCAGAGGGACAGTGGAACTTTTCCAGGACCCCTTACGTCTTTGATTGGGATGAACCGGACAAGAGATGGGCATGGGTTTGGAAATGGCCTGATGGTAGATGCTTCCTTTGCCAACTGCCAAGCCGACTTAGAAGAACTTGATCATATTCTTCGACAATGCCCTGTTGCTGTCAGTTGCTGGCAAAAGCGAGCAAACTCGGAGAGCCATCTCCAACAGAAAAGCTCATCACGATATAAACCGCTAAAAAGGCTGGCCTTTGTATTCCTCGTGAGTCGTGACCCACTTTTCTCTGAAGCGCGTGGCCATCGAGTCTCCTCCTCTTCGTTCTTTTGTGCTCTCACCATCAAGCTCATATACACTCTTTCACCTCCTGTGTTCTGTAATTTGCATTATCTTCTCTCTGGAAATTCTCACGACATGTTTCACTTGAGCAACACTCTGATTGGCATCCTCAATTTCTTGACGTTCCTCTTCTCCATTCCCATCCTTTGGATGGGTATTTGGCTCAACAAACACGGCGCCACCGAGTGCGAAAAATGGCTCGACAAGGTTTTCATTGTGTTGGGTGTCTTCCTCCTCTTGGTGTCGCTCGCTGGGCTTGTCGGCGCTTGCTGCCGCATCTCCTTGCTCCTCTGGATCTACCTTGTAGTGATGTTCTTGCTCATCGTCATCGTCTTCTGCTTCACAATCTTCGCCTTCGTCGTTACCAACAAAGGCGCCGGGGAAGTTTTATCCGGAAAAGGGTATAAGGAGTATAGGCTCGGCGATTACTCTCACTGGTTACGGAACAGGGTGAGCGACCCAAAATACTGGAAGACCATGAAGAGCTGTCTTCAGAACGGCCAATACTGCTCCGACTACCAAAAGCTGTATGGCAAAGACGATGTTAACAAGTTCAATACAGAGAAATTAACACCGCTTCAGTCTGGGTGTTGTAAGCCATCAAACGACTGTAACTTTGTATACGAGAGCCCAACCGTGTGGAACAAGGCGGCGAATTCGAATTATACGAACCCTGATTGTCGTGCTTGGAACAATGATCCCAATGTGCTGTGCTACAACTGTAATGCATGCAAGGCTGGGATAGTGCAAGGCACTAAGACTAATTGGAAGAAGTCGGCTAAGGCTAACATAATATTCCTCGTCCTCCTCATTATTGTGTACTCCATTGGCTGCTGTGCATTCAGAAATAACAGGAGGGATGATTGGAAGTGA 1566 0.4681 MKGDKNSKKTSCRKVDVCRFPAQNHSYSITEQRSSLAHFLISDSDSVLFSLMAEIELKTAPADFRFPTTNQTRHCFTRYVEFHRCVAAKGEGAGDCERFAKYYRSLCPGEWVEKWNDQRDSGTFPGPLTSLIGMNRTRDGHGFGNGLMVDASFANCQADLEELDHILRQCPVAVSCWQKRANSESHLQQKSSSRYKPLKRLAFVFLVSRDPLFSEARGHRVSSSSFFCALTIKLIYTLSPPVFCNLHYLLSGNSHDMFHLSNTLIGILNFLTFLFSIPILWMGIWLNKHGATECEKWLDKVFIVLGVFLLLVSLAGLVGACCRISLLLWIYLVVMFLLIVIVFCFTIFAFVVTNKGAGEVLSGKGYKEYRLGDYSHWLRNRVSDPKYWKTMKSCLQNGQYCSDYQKLYGKDDVNKFNTEKLTPLQSGCCKPSNDCNFVYESPTVWNKAANSNYTNPDCRAWNNDPNVLCYNCNACKAGIVQGTKTNWKKSAKANIIFLVLLIIVYSIGCCAFRNNRRDDWK 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1067 521 PRINTS Transmembrane four family signature 295 321 - -
Lele23g1067 521 PRINTS Transmembrane four family signature 322 350 - -
Lele23g1067 521 PRINTS Transmembrane four family signature 263 286 - -
Lele23g1067 521 CDD Cyt_c_Oxidase_VIb 54 127 IPR003213 GO:0005739
Lele23g1067 521 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 72 115 - -
Lele23g1067 521 Gene3D Cytochrome c oxidase, subunit VIb 52 130 IPR036549 GO:0005739|GO:0045277
Lele23g1067 521 Pfam Cytochrome oxidase c subunit VIb 65 119 IPR003213 GO:0005739
Lele23g1067 521 PANTHER TETRASPANIN-8-RELATED 259 518 IPR044991 GO:0009734|GO:0016020
Lele23g1067 521 SUPERFAMILY Cytochrome c oxidase subunit h 55 127 IPR036549 GO:0005739|GO:0045277
Lele23g1067 521 Pfam Tetraspanin family 262 511 IPR018499 GO:0016020
Lele23g1067 521 ProSitePatterns Transmembrane 4 family signature. 306 328 IPR018503 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1067 Lele-ChrLele23 16221529 16231856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1067 257 520 Miscellaneous Gene Families AT4G28050 60.227 7.72e-116 341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0907 18 5778894 5798045 Lele23g1067 23 16221529 16231856 CCT
Lele19g0942 19 5765730 5774369 Lele23g1067 23 16221529 16231856 CCT
Lele20g0508 20 12748527 12753273 Lele23g1067 23 16221529 16231856 CCT
Lele23g1067 23 16221529 16231856 Lele23g1067 23 16221529 16231856 ECH
Lele21g0985 21 6919790 6921472 Lele23g1067 23 16221529 16231856 hybridization