Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0398 ATGAGAGCAGACAACGAGGTGATAGGAACTTCATCAGATCTTCATAATCGTGAATCAGACATAGAACTCATTGGAGGTGAAAGGGTACCTCATAGTGGTCCATTAAGTGGACCTTTGAACAAAAGGGTCGGAAGGAAGAGTCCTCAGTTCAGTGTTCCTGAATCCAGTACCGCCATTAATGTTGCTAGCAGCAGTACTGGAAACAAACCAGAGGATGGAGAAGAAGGAGCTTATGTTGAGGTCACAATGGATATACAAGGAGATTCTGTTGCTTTACACAGTGTTAAAACTGTTGCAGGTGGGGATGTTCGTGAAGATGAGAGATCTGGTTTGCTTAAAGGCCTTGAGAAGAAAACATCATTTGGTGCCTCACTTGTTCGTAATGCTTCTATTAAAGTGAAGCATGTGTCTCAGGAACTGAAGCGTTTGGCTTCATTTTCAAAGCCAAAAGCACCAGTGAAACACTATGATAGGTCTAAATCTGCAGCTGCTCATGCTCTTAAGGGACTCAAGTTTATCAGTAAGACTGATGGTTGTGCAGGATGGGATGAGGTTGAGAAGCAATTTGATAAGCTTACTGCTACTACAGATGGCTATCTTCCTCGTGCTCTCTTTGGAAAATGTATAGGAATGAGGAAGGAATCTGAGGCTTTTGCATTGGAGCTGTTTGATGCTCTCGCTCGGAAGAGAGGAATTCAGGGGGATTCCGTTAACAAGGCACATCTGAAGGATTTTTGGGACCAGATTTCAGACCAAAGCTTCGATTCTAGGCTTAGAACATTCTTTGACATGGTGGATAAAGATGCAGATGGCAGAATCACTGAGGAAGAAATCAAAGAGATTATCTTGCTTAGCGCCACTACCAACAAACTCACGAATATCCAGAAACAAGCAGAAGAATATGCAGCTTTGATTATGGAAGAACTGGACCCAGATGAAACAGGATTTATCATGATAGACAACCTTGAGTTGTTATTGTTGTATGGACCTGAAAATTCTAAGAGGGGAGATAGCAAGTACCTGAGCCAAATGCTAAGCCAAAAGCTCATGCCTACCTATGACAAAAATGTTATTAGGCGGTGGTACAGGGACACCTCATACTTCTTACAGGATAATTGGAAGAGAGCTTGGGTACTGGCACTGTGGATGGGTGTGATGGCAGGTCTATTTGCCTACAAGTACGTGCAGTATCGAGAAAGAGACGACGTGTATGAGGTAATGGGCCATTGTGTATGCATGGCGAAAGGTGCAGCTGAGACACTAAAATTGAACATGGCTCTCATTTTGTTACCTGTTTGCCGAAACACCATTACCTGGATCAGGAACAAGACCAGGCTAGGTGTTGTGGTTCCTTTTGATGACAACCTCAACTTCCACAAGGTGATAGCTGTGGGAGTAACATTTGGCGTTGCTATACATGCTATTTATCATCTTACTTGTGATTTTCCTCGCCTTCTTGATGCAAGTAATGAGAAGTACATGTCTATGGTGCAATATTTCGGCCCTAAACCTACTAGTTATTGGCATTTTGTCAAATCATGGGAAGGAGTGACAGGGATTATAATGATAGTGCTAATGGCAATAGCATTCACCCTGGCCACCCCTTGGTTCAGGAGAGGCAGGGTGAAGCTACCCAAACCCCTCGACAAGCTTACGGGTTTCAATGCCTTTTGGTATTCCCATCACTTCTTCATTGCTGTGTATGCCATGTTGATAGTGCATGGAGAGAAACTTTACTTGACCAAGAAATGGTACAAGAAAACGACCTGGATGTATTTGGCTATTCCTGTAATCATCTATGTATTGGAAAGGTTGATTAGAGCCCTCAGATCCAGCATCAAGCCAGTGAGAATATTAAAGGTGGCTGTTTATCCTGGAAATGTGTTAGCAATTCACGTGTCAAAGCCTCATGGATTTAGATACAGGAGTGGACAATACATGTTTGTCAATTGTGCTGCTGTATCTCCGTTTGAATGGCATCCGTTCTCCATAACCTCAGCCCCTGGGGATGACTACCTTAGTGTTCATATTCGAACAGCAGGTGACTGGACCCGGAGCCTAAAAGCAAAATTCTCAGAGGCATGCCGACCTCCCCCAGATGGGAAGAGTGGGCTTCTAAGAGCTGAACGCGTGCTAGGAGATAGCAGTCCAAGCTCTCTTCCTAAAGTTCTGATTGATGGTCCATATGGGGCACCAGCTCAAGACTATCAGAAGTATGAAGTGGTTTTACTAGTGGGATTAGGAATTGGAGCTACCCCAATGATCAGTATAGTGAAGGACATTGTTAATAACTACAAGGCGATGGAAGAAGAAGAGGAGATGGCGTTAGAGGAAGGAGCAAGTGGTAAATCCCCACACAGGAAATCTGGGCACAGTGAGTTCAAAACTAGAAAGGCCTACTTCTATTGGGTGACTAGAGAACAAGGTTCTTTTGACTGGTTCAAAGGGGTAATGAATGAGACAGCTGAAGCAGACCATCGTGGAGCGATTGAGCTCCACAATTACTGCACTAGTGTCTATGAAGAAGGTGACGCACGCTCTGCTCTTATCGCTATGCTACAGTCTCTAAACCACCAAAAGAATGGCGTCGACATTGTCTCAGGCACTCGTGTCATGACTCACTTTGCCAAACCCAATTGGCGAAGTGTGTACAAGCGCATTGCGCTTGCTCATCCACAAGCCCGAGTTGGGGTGTTTTACTGTGGGATTCAGGCGCTCACTGTAGAGCTTCGTCAATTAGCTTCGGATTTCTCTCACAGGACAAGCACGAAATTCGACTTCCATAAGGAAAATTTCTAA 2799 0.443 MRADNEVIGTSSDLHNRESDIELIGGERVPHSGPLSGPLNKRVGRKSPQFSVPESSTAINVASSSTGNKPEDGEEGAYVEVTMDIQGDSVALHSVKTVAGGDVREDERSGLLKGLEKKTSFGASLVRNASIKVKHVSQELKRLASFSKPKAPVKHYDRSKSAAAHALKGLKFISKTDGCAGWDEVEKQFDKLTATTDGYLPRALFGKCIGMRKESEAFALELFDALARKRGIQGDSVNKAHLKDFWDQISDQSFDSRLRTFFDMVDKDADGRITEEEIKEIILLSATTNKLTNIQKQAEEYAALIMEELDPDETGFIMIDNLELLLLYGPENSKRGDSKYLSQMLSQKLMPTYDKNVIRRWYRDTSYFLQDNWKRAWVLALWMGVMAGLFAYKYVQYRERDDVYEVMGHCVCMAKGAAETLKLNMALILLPVCRNTITWIRNKTRLGVVVPFDDNLNFHKVIAVGVTFGVAIHAIYHLTCDFPRLLDASNEKYMSMVQYFGPKPTSYWHFVKSWEGVTGIIMIVLMAIAFTLATPWFRRGRVKLPKPLDKLTGFNAFWYSHHFFIAVYAMLIVHGEKLYLTKKWYKKTTWMYLAIPVIIYVLERLIRALRSSIKPVRILKVAVYPGNVLAIHVSKPHGFRYRSGQYMFVNCAAVSPFEWHPFSITSAPGDDYLSVHIRTAGDWTRSLKAKFSEACRPPPDGKSGLLRAERVLGDSSPSSLPKVLIDGPYGAPAQDYQKYEVVLLVGLGIGATPMISIVKDIVNNYKAMEEEEEMALEEGASGKSPHRKSGHSEFKTRKAYFYWVTREQGSFDWFKGVMNETAEADHRGAIELHNYCTSVYEEGDARSALIAMLQSLNHQKNGVDIVSGTRVMTHFAKPNWRSVYKRIALAHPQARVGVFYCGIQALTVELRQLASDFSHRTSTKFDFHKENF 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0398 932 SFLD NADPH oxidase subgroup (NOX) 138 932 - -
Lele23g0398 932 Gene3D - 730 932 IPR039261 -
Lele23g0398 932 Pfam Ferric reductase like transmembrane component 416 572 IPR013130 -
Lele23g0398 932 Pfam Ferric reductase NAD binding domain 739 914 IPR013121 GO:0016491
Lele23g0398 932 PRINTS Cytochrome B-245 heavy chain signature 744 761 IPR000778 GO:0016020|GO:0016491
Lele23g0398 932 PRINTS Cytochrome B-245 heavy chain signature 462 480 IPR000778 GO:0016020|GO:0016491
Lele23g0398 932 PRINTS Cytochrome B-245 heavy chain signature 554 574 IPR000778 GO:0016020|GO:0016491
Lele23g0398 932 PRINTS Cytochrome B-245 heavy chain signature 721 734 IPR000778 GO:0016020|GO:0016491
Lele23g0398 932 Pfam Respiratory burst NADPH oxidase 156 256 IPR013623 GO:0004601|GO:0050664
Lele23g0398 932 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 722 828 IPR039261 -
Lele23g0398 932 Coils Coil 758 778 - -
Lele23g0398 932 Gene3D Translation factors 603 693 - -
Lele23g0398 932 MobiDBLite consensus disorder prediction 49 70 - -
Lele23g0398 932 Pfam FAD-binding domain 615 732 IPR013112 GO:0016491
Lele23g0398 932 CDD NOX_Duox_like_FAD_NADP 618 845 - -
Lele23g0398 932 FunFam Respiratory burst oxidase protein A 730 932 - -
Lele23g0398 932 FunFam Respiratory burst oxidase homolog A 156 274 - -
Lele23g0398 932 Gene3D - 156 274 - -
Lele23g0398 932 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 611 735 IPR017927 GO:0016491
Lele23g0398 932 ProSiteProfiles EF-hand calcium-binding domain profile. 253 288 IPR002048 GO:0005509
Lele23g0398 932 PANTHER NADPH OXIDASE 217 932 - -
Lele23g0398 932 SFLD Ferric reductase subgroup (FRE) 358 932 - -
Lele23g0398 932 ProSitePatterns EF-hand calcium-binding domain. 266 278 IPR018247 -
Lele23g0398 932 MobiDBLite consensus disorder prediction 23 74 - -
Lele23g0398 932 SUPERFAMILY Riboflavin synthase domain-like 615 732 IPR017938 -
Lele23g0398 932 SUPERFAMILY EF-hand 170 327 IPR011992 -
Lele23g0398 932 FunFam Respiratory burst oxidase homolog A 602 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0398 Lele-ChrLele23 2880518 2885087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0398 31 932 Miscellaneous Gene Families AT5G51060 64.809 0.0 1195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0398 23 2880518 2885087 Lele23g0398 23 2880518 2885087 ECH
Lele21g1612 21 24134544 24139099 Lele23g0398 23 2880518 2885087 hybridization
Lele22g1595 22 21535369 21539929 Lele23g0398 23 2880518 2885087 hybridization