Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0100 ATGGCAACAACTTCATTGTGTTCATCGACGCTCCAATCTCAAGTCAATGGATTGGCTGGCGGACTCAAGCTTCAAAAGACTTCTCTCTCTCAGCCTCGTTCCGTCACTTTCTATAGAAGGAAGCTGACTACTACGGTGAAGGCTATGTCTCGTGTTGACAAGTTTTCTAAAAGTGACATCATTGTTTCCCCTTCCATCCTTTCTGCTAACTTTGCAAAGCTGGGAGAGCAGGTAAAAGCAGTGGAATTGGCAGGCTGTGATTGGATCCATGTTGACGTAATGGATGGTCGTTTTGTACCAAATATTACAATTGGGCCTCTTGTGGTTGATGCTTTGCGCCCTGTGACAGACCTTCCATTGGATGTGCACTTGATGATTGTAGAACCTGAACAGCGAGTTCCAGATTTTATCAAGGCAGGGGCTGACATTGTCAGTGTACATTGTGAGCAATCTTCCACCATCCATTTGCATCGTACACTTAATCAAGTGAAAAGCCTGGGAGCCAAAGCTGGAGTTGTCCTAAACCCTGGTACCCCATTAAGTGCGATCGAATATGTCCTTGATGTGGTTGATTTGGTCTTGATTATGTCTGTCAACCCCGGGTTTGGTGGCCAGAGTTTTATTGAGAGCCAAGTAAAGAAAATTTCTGATTTGAGAAGAATGTGTGCGGAAAAGGGAGTGAATCCATGGATTGAAGTGGACGGTGGAGTTGGTCCTGCAAATGCTTACAAGGTGATTGAGGCTGGAGCTAATGCTCTGGTTGCTGGTTCTGCTGTGTTTGGAGCTAAAGATTATGCTGAAGCAATAAGAGGAATCAAAACCAGCAAAAGGCCCGAAGCAGTTGCTGTATAA 852 0.4507 MATTSLCSSTLQSQVNGLAGGLKLQKTSLSQPRSVTFYRRKLTTTVKAMSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCAEKGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIRGIKTSKRPEAVAV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0100 283 Hamap Ribulose-phosphate 3-epimerase [rpe]. 59 275 IPR026019 GO:0004750|GO:0006098
Lele23g0100 283 TIGRFAM rpe: ribulose-phosphate 3-epimerase 62 273 IPR026019 GO:0004750|GO:0006098
Lele23g0100 283 Pfam Ribulose-phosphate 3 epimerase family 62 260 IPR000056 GO:0005975|GO:0016857
Lele23g0100 283 CDD RPE 61 273 IPR000056 GO:0005975|GO:0016857
Lele23g0100 283 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 193 215 IPR000056 GO:0005975|GO:0016857
Lele23g0100 283 SUPERFAMILY Ribulose-phoshate binding barrel 54 276 IPR011060 -
Lele23g0100 283 Gene3D Aldolase class I 50 279 IPR013785 -
Lele23g0100 283 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 89 103 IPR000056 GO:0005975|GO:0016857
Lele23g0100 283 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 60 276 IPR000056 GO:0005975|GO:0016857
Lele23g0100 283 FunFam Ribulose-phosphate 3-epimerase 57 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0100 Lele-ChrLele23 656599 671491 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0100 23 656599 671491 Lele23g0100 23 656599 671491 ECH
Lele21g1914 21 26352522 26357359 Lele23g0100 23 656599 671491 hybridization
Lele22g1881 22 23672401 23676344 Lele23g0100 23 656599 671491 hybridization