Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1914 ATGGCAACGACTTCATTGTGTTCATCGACGCTCCAATCTCAAGTCAATGGATTGGGTGGCGGACTCAAGCTTCAAAACACTTCTCTCTTTCAGCCTCGTTCCGTCACTTTCTATAGAAGGAAGCTGACTACTACGGTGAAGGCTATGTCTCGTGTTGACAAGTTTTCTAAAAGTGAAATCATTGTTTCCCCTTCCATCCTTTCTGCTAACTTTGCAAAGCTGGGAGAGCAGGTAAAAGCAGTGGAATTGGCAGGCTGTGATTGGATCCATGTTGACGTAATGGATGGTCGTTTTGTACCAAATATTACAATTGGGCCTCTTGTGGTTAATGCTTTGCGCCCTGTGACAGACCTTCCATTGGATGTGCACTTGATGATTGTAGAACCTGAACAGCGAGTTCCAGATTTTATCAAGGCAGGGGCTGACATTGTCAGTGTACATTGTGAGCAATCTTCCACCATCCATTTGCATCGTACAATTGATCAAGTGAAAAGCCTGGGAGCCAAAGCTGGAGTTGTCCTAAACCCTGGTACCCCATTAAGTGCGATCGAATATGTCCTTGATGTGGTTGATTTGGTCTTGATTATGTCTGTCAACCCCGGGTTTGGTGGCCAGAGTTTTATTGAGAGCCAAGTAAAGAAAATTTCTGATTTGAGAAGAATTTGTGCGGAAAAGGGAGTGAATCCATGGATTGAAGTGGACGGTGGAGTTGGTCCTGCAAATGCTTACAAGGTGATTGAGGCAGGAGCTAATGCTCTGGTTGCTGGTTCTGCTGTGTTTGGAGCTAAAGATTATGCTGAAGAGGAATCAAAACCAGCAAAAGGCCAGAAGCAGTTGCTGTATAATGCACTTCCTGAGGATGCTGTACATTTACCTGTGATACAATATCCATGA 894 0.4452 MATTSLCSSTLQSQVNGLGGGLKLQNTSLFQPRSVTFYRRKLTTTVKAMSRVDKFSKSEIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVNALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTIDQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRICAEKGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEEESKPAKGQKQLLYNALPEDAVHLPVIQYP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1914 297 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 60 268 IPR000056 GO:0005975|GO:0016857
Lele21g1914 297 Hamap Ribulose-phosphate 3-epimerase [rpe]. 59 276 IPR026019 GO:0004750|GO:0006098
Lele21g1914 297 Gene3D Aldolase class I 50 272 IPR013785 -
Lele21g1914 297 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 193 215 IPR000056 GO:0005975|GO:0016857
Lele21g1914 297 FunFam Ribulose-phosphate 3-epimerase 57 278 - -
Lele21g1914 297 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 89 103 IPR000056 GO:0005975|GO:0016857
Lele21g1914 297 SUPERFAMILY Ribulose-phoshate binding barrel 54 268 IPR011060 -
Lele21g1914 297 CDD RPE 61 267 IPR000056 GO:0005975|GO:0016857
Lele21g1914 297 Pfam Ribulose-phosphate 3 epimerase family 62 260 IPR000056 GO:0005975|GO:0016857
Lele21g1914 297 TIGRFAM rpe: ribulose-phosphate 3-epimerase 62 267 IPR026019 GO:0004750|GO:0006098
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1914 Lele-ChrLele21 26352522 26357359 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1914 21 26352522 26357359 Lele21g1914 21 26352522 26357359 ECH
Lele21g1914 21 26352522 26357359 Lele23g0100 23 656599 671491 hybridization
Lele21g1914 21 26352522 26357359 Lele24g1828 24 23265886 23269844 hybridization