Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1501 ATGACGAAGTTCAGGAAGCTAGGTCGACCCGCGGGTCATCGGATTTCTATGCTCAGAACTATGGTGTCGCAGTTGGTGAAGCACGAACGTATCGAAACCACTGTTGCCAAGGCCAAAGAGGTCCGCAGACTTGCAGATAACATGGTACAGCTTGGGAAAGAGGGTACCCTACATGCTGCAAGGCGTGCTGCCAGTTTTGTGCGTGGAGATGATGTACTTCACAAACTATTTACAGAACTGGCTTACAGATACAAGGATAGAGCAGGTGGATATACTAGAGTGCTTCGGACTCGAATTCGAGTGGGGGATGCTGCACCAATGGCTTACATTGAGTTTATTGACAGAGAAAATGAGCTGAGGCAGTCAAAGCCACCAAATCCTCAACCACCGCCGAGAGCTCCTCTTGATCCGTGGACAAGATCCCTTCTCACTAGGCAGCATGCACCACCGAAAGAAGAGAAATCTGACTCTGACGTGTTTTATGGGGATGACATGCTTGATCTGCTTTATGCAATGACGTGGTACAGTAGATCTCAGGGGTCCCTGCTATGTGGTACTTTCTCCCTGTTGCTGTTGCTTATAATTCTTGCCTTTCAAGATGAAGCAGTCTTAAGTAGATGGGAACAGGGGTGGCCAACTGGTGCAATGTTCCTTTGGATCAACCCTAAGAATATTTCAGAGAAGGAGATCAAAAGATCAGATGCTGCATGCCCCTGTGGCTTAATAGTTAATATGAGAGCTACAATGGGTCATTCCACACATGGCGTTGAAGCTAGACACCGTTTACCTACTTCCATGTCAGTTCCTTCTTCTTCTCTTCATATTCATTCAGCTAAACTCTTTCTTGAAGACTTGAAACGAAGATTGCCAAGAAGTAGGACGAAAGATGTGGAGAAATCTTTCCATTTAACAAGCCAAGAAAAGAGCTCAAGATGCAAACTTTCTATCTTAAAACTCATCCTATTACTGACCATTTCTGGCACTTTTGTAACTCTTCTCTACTCTCCAGAGGTCTATAACACTAACCACTTATCAAGCTCAGGTTCTGGGTGGATATGGGGTGGCTCAGATACTCGATATATATCGAATGAGGACATTGATTGGAATGATATATTGGAAGTAACTAGGAAGATGACTGGAAAAAATGAATTGCAAGGGGTTGGTCTTCTGAATTTCAACAATTCTGAAGTAGAGAAATGGGAGAAACTTATGCCTGATGCTAAAAACATAGTTTTGCATCTTGAGTATGCAGCAAGAAATGTCACATGGGAGTCACTATACCCAGAATGGATTGATGAGGAAGAAGAAACTGAAGTTCCGGTTTGTCCCTCTCTACCGAGTCTTAGGTCTCCCGGAACAAGGCTTAATCTGATAGCAGTGAAGCTCCCTTGTCGCCCGGGGGCAAAAAATTCAAATTGGTCTAGAGATGTTGCTAGGCTTCACCTGCAGCTTGCTGCAGCTGGGCTTGCAGCATCTTTTAAAGGAAATTACACTGTGCATTTGCTCTTCATTACCAATTGCTTTCCAATTCCAAATCTCTTTACTTGCAATGAACTTGTTGCACATGAAGGGAATGTATGGCTGTACAATCCAAACTTGAGTGTCTTAAAACAAAAAGTTCATCTCCCAGTAGGATCTTGTGAACTTGCAATTCCCATGAGGGGTGAAGAGCTGGTGTATGCTGGGAATGTACACAGAGAAGCCTATGCAACAATTCTTCATTCAGCCCATGTTTATGTTTGTGGAGCCATAGCTGCTGCACAAAGCATTCGCATGTCTGGATCAACTAGAGACCTTGTGATCCTTGTTGATGAGACCATAAGTGGATATCACAGAAGTGGTTTAGAAGCAGCAGGATGGAAAGTAAGAATAATTCAGAGAATCAGAAACCCTAAAGCTGAGAAAGATGCATACAATGAATGGAACTACAGCAAATTCAGATTATGGCAGCTCACAGATTATGACAAGATCATATTCATTGATGCAGATTTGCTTATACTAAGAAACATAGATATTCTCTTTGGAATGCCAGAAATTACAGCAACAGGAAACAATGCATCACTTTTTAACTCCGGTGTTATGGTGGTTGAGCCATCAAATTGCACATTCCAGCTTCTGATGGATCATATTAATGAGATTGAGTCCTACAATGGAGGAGATCAAGGATATTTGAATGAGATATTCACCTGGTGGCATAGAATTCCAAGGCACATGAACTTTCTGAAGCATTTCTGGGTTGGTGATGAAGAAGAGAAGAAACAAATGAAGACAATGCTGTTTGGAGCAGACCCTCCAATTCTCTATGTGCTTCACTATCTTGGAATGAAGCCATGGCTGTGTTTTAGGGACTATGATTGTAACTGGAACTTCGATATCTTTCAGGAGTTTGCGAGCGATGTTGCTCATGAAAGATGGTGGAGAGTTCATGATGCCATGCCTGGGGTTTTGCAGCAGTTTTGTCTGTTGAAATCAAAGCAAAAGGCACAATTAGAGTGGGATAGAAGGCAAGCTGAGAAAGCAAATTACACAGATGGACATTGGAGAATTAAGGTGAAAGATTGGAGATTGAAGAAATGTGTTGATAATTTGTGTAACTGGAAAAGCATGTTGAGGCATTGGGGAGAGACGAATTGGACAGATGTGGAGTCTTATTATAATCCAACACCACCTGCAATTGCTACTACCAAAAAAACCAACTTCTATTTCTAA 2709 0.4241 MTKFRKLGRPAGHRISMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLHAARRAASFVRGDDVLHKLFTELAYRYKDRAGGYTRVLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPQPPPRAPLDPWTRSLLTRQHAPPKEEKSDSDVFYGDDMLDLLYAMTWYSRSQGSLLCGTFSLLLLLIILAFQDEAVLSRWEQGWPTGAMFLWINPKNISEKEIKRSDAACPCGLIVNMRATMGHSTHGVEARHRLPTSMSVPSSSLHIHSAKLFLEDLKRRLPRSRTKDVEKSFHLTSQEKSSRCKLSILKLILLLTISGTFVTLLYSPEVYNTNHLSSSGSGWIWGGSDTRYISNEDIDWNDILEVTRKMTGKNELQGVGLLNFNNSEVEKWEKLMPDAKNIVLHLEYAARNVTWESLYPEWIDEEEETEVPVCPSLPSLRSPGTRLNLIAVKLPCRPGAKNSNWSRDVARLHLQLAAAGLAASFKGNYTVHLLFITNCFPIPNLFTCNELVAHEGNVWLYNPNLSVLKQKVHLPVGSCELAIPMRGEELVYAGNVHREAYATILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETISGYHRSGLEAAGWKVRIIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDILFGMPEITATGNNASLFNSGVMVVEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPRHMNFLKHFWVGDEEEKKQMKTMLFGADPPILYVLHYLGMKPWLCFRDYDCNWNFDIFQEFASDVAHERWWRVHDAMPGVLQQFCLLKSKQKAQLEWDRRQAEKANYTDGHWRIKVKDWRLKKCVDNLCNWKSMLRHWGETNWTDVESYYNPTPPAIATTKKTNFYF 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1501 902 Hamap 50S ribosomal protein L17 [rplQ]. 2 113 IPR000456 GO:0003735|GO:0005840|GO:0006412
Lele21g1501 902 SUPERFAMILY Prokaryotic ribosomal protein L17 3 116 IPR036373 GO:0003735|GO:0005840|GO:0006412
Lele21g1501 902 SUPERFAMILY Nucleotide-diphospho-sugar transferases 567 812 IPR029044 -
Lele21g1501 902 FunFam Hexosyltransferase 564 816 - -
Lele21g1501 902 CDD GT8_Glycogenin 567 812 - -
Lele21g1501 902 MobiDBLite consensus disorder prediction 118 138 - -
Lele21g1501 902 FunFam 50S ribosomal protein L17 1 113 - -
Lele21g1501 902 Pfam Glycosyl transferase family 8 573 779 IPR002495 GO:0016757
Lele21g1501 902 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 564 813 IPR029044 -
Lele21g1501 902 PANTHER GLYCOGENIN SUBFAMILY MEMBER 473 859 - -
Lele21g1501 902 Pfam Ribosomal protein L17 17 113 IPR000456 GO:0003735|GO:0005840|GO:0006412
Lele21g1501 902 Gene3D Ribosomal protein L17 1 113 IPR036373 GO:0003735|GO:0005840|GO:0006412
Lele21g1501 902 TIGRFAM L17: ribosomal protein bL17 4 114 IPR000456 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1501 Lele-ChrLele21 23295854 23304263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g1501 286 900 Glycosyltransferase AT3G18660 64.873 0.0 849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1501 21 23295854 23304263 Lele23g0511 23 3751133 3754820 hybridization
Lele21g1501 21 23295854 23304263 Lele24g1441 24 20356829 20360623 hybridization