Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1343 ATGGTGCCTGTTCGTTTTTCGAATTCGATTTCTATCATCCCAGATTGCTTCCGGTATCATCGTGTGTTGGCTGGTGTGGACTATGAAGCTTCAAAGGCAGGACAGGTTCAGAGCGTCGCAGGGGCTATGGCTATGAGAAACGGAATTTATTCCAGCAATCTTCAGGTCTTTTCGAAACTGAAACTCTGCAATGAAGAGTTCATGGGAAAATTACTTAGCAGAAGATGGACTTTGCTCAGCCCTGAAACAAAAGTTCACCAAGTAATACAAAGTGACAAATCGCATGATTGTGGTGTCTTTTTACACACAAATCCATCTTTCAATGATGACTTAAGGAAGATGGATAAAGAAGATCGATACTTCTATATTGTGCGGGATGATTTGTTGCACCCATTAATTAATGGCAATAAAGCAAGAAAACTAGATGCAGTACTTCCTCTACTTGAAGATTGTTCTATCACGGATGTGGTCACATGTGGAGGCTGTCAGAGTGCTCACACAGCTGCTGTCGCTACTCTATGTGCCCAGAGAGGAATCAAATCACATTTGCTTCTACGAGGAGAGCGACCTGAAATCTTGACTGGCTATAACTTGATGTCCACGATATATGGAAATGTGACATATGTTCCTAGATCTATATATGCCAACCGTGAAGAGGTGCTAAAGAACCATGCCAAGTTGGTGGCTGGTAACAATGATTCTGTAGTATGGTTAGACAATCTCATTGAAGCTTCAACAGCTGGCTTGTCTGCTGCTCCAACATTAGCAGAAATAGATGCTAGTAGAAATGCTAGAAACCATCTAAGAAAAATTTTAATAATTAATGAAGGTGCTGCTGATTCTGTAGCTCTACTAGGTGTTATTCGATTAGTGCAATACTTGTCAGAGAATCATTTATTTGGAAGAAGGGCATTGAGATTTGTTGTAGATGCTGGTACTGGGACTACAGCTATTGGTTTAGGACTTGCTGCCCTATGTTTGGGACTCCCATGGGAGATTTATGCAGTCATGCTGGCTGACACCATCGATGTGTACAGAGAAAAGGAAGAACGATTAATTTCTGAATTTAAGAAGCATTTTAATGTTCAGTTTATTGACCACAGTGTGAACAAAGAGGGTGCCAGAATCGTGCATTGGGTGGAACGATCCCGTCCAAGGAAATTTGGAAAAGTTTTGGAAGGGGAAATGCAAACATGCCAGCAAGTTGCACAACAAACTGGGATTCTGGTGGATCCTGTGTACACTCTGGCTGCTTGGGAAATGGCTACTCTTCTGTGTAAAGAAGCTAAAGAAGGATCAGAGGTGGTGATGCTTCACACTGGAGGCACTTTGTGCATGTTTGGGTTAGCTCAGAGGTACAAAAATTACTTTGGCAATCTTTGA 1383 0.4187 MVPVRFSNSISIIPDCFRYHRVLAGVDYEASKAGQVQSVAGAMAMRNGIYSSNLQVFSKLKLCNEEFMGKLLSRRWTLLSPETKVHQVIQSDKSHDCGVFLHTNPSFNDDLRKMDKEDRYFYIVRDDLLHPLINGNKARKLDAVLPLLEDCSITDVVTCGGCQSAHTAAVATLCAQRGIKSHLLLRGERPEILTGYNLMSTIYGNVTYVPRSIYANREEVLKNHAKLVAGNNDSVVWLDNLIEASTAGLSAAPTLAEIDASRNARNHLRKILIINEGAADSVALLGVIRLVQYLSENHLFGRRALRFVVDAGTGTTAIGLGLAALCLGLPWEIYAVMLADTIDVYREKEERLISEFKKHFNVQFIDHSVNKEGARIVHWVERSRPRKFGKVLEGEMQTCQQVAQQTGILVDPVYTLAAWEMATLLCKEAKEGSEVVMLHTGGTLCMFGLAQRYKNYFGNL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1343 460 Gene3D - 136 238 IPR036052 -
Lele21g1343 460 Pfam Pyridoxal-phosphate dependent enzyme 121 441 IPR001926 -
Lele21g1343 460 Gene3D - 246 456 IPR036052 -
Lele21g1343 460 FunFam D-cysteine desulfhydrase 2, mitochondrial 136 237 - -
Lele21g1343 460 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 118 454 IPR036052 -
Lele21g1343 460 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED 66 457 IPR027278 -
Lele21g1343 460 FunFam D-cysteine desulfhydrase 2 mitochondrial 258 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1343 Lele-ChrLele21 21870607 21880251 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1343 21 21870607 21880251 Lele21g1343 21 21870607 21880251 ECH
Lele21g1343 21 21870607 21880251 Lele23g0681 23 5275371 5283792 hybridization
Lele21g1343 21 21870607 21880251 Lele24g1297 24 18966428 18971246 hybridization