Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0956 ATGGCAGCTCAGCAGGTTTCATTCGTCTATGTGACTTGCGACAACCAACAATATGTGACCATAGTGTCGGAATGTCTTTTCTATTACTGTTATGATACAAAATTTTCATTCAAGAATCATATTCTAGAACTTGAATCAGAAGTATCCTTTTCAATGCATTGGGCATTTAACATTATGGTTTCATTTCTTGTTCTAGCTTTGGGCATTTATCCAGTTGCAGTATTCAGAATTCATGAGCCCCTACGCCGCCCTAGATGGAGATCGACTTCATTTTGCAACTGAAATCTCTTGAGAATATTCACCACCGCGAATGCAAGTGTGGAAGACGTCAAAATGGATACAATTGGAAATACTGACAGAGATGACGGCTTAGACTATGATACAATAACAGCGATTCAGTTCGAGAAGCGTGGTGATTATCTAGCCATTGGAGATCATGGAGGACGTATTGTGATATTTGAAAAAGATGATAGAAAGATTATTGAAGGTTATGCAGGCAACACTTTTCATGCAAAATGCCAGAAGGTGTATGCTCAATATCACAGCTCTAATATTAACTCAATTTCAAATAATAGTGATGCTGAGACATTTATCTCAGCAGATGAGTTTAGAATCAATTTATGGAATCTTGAGATCAGCGATCGGAATTTCAATATCATCGACATGAAGCCATCGAACATGGAGGAACCTTATGAGATGATAACATCAGCTGAATTCCATCCAGTACACTGCAACCTGCTAGCATATGGCAGTTCACAGGGTCTTATTCGTATATCTGACTTGAGACAAGCAGCAAGATGTGATCGTAGTGTTAGATTATTTCATGATCGATCACTCTTCCGCATGAAATTCCCTTTTGATGAAGTGGCTGCATGTATCTCTGATGTAAAATTTCTGGTTGATGGCATTGGTGGCCAACAGCTTATCAGTCGTGATTACATGAATATGAAGCTAGCCGAGTTATACGACAAGGACCACATATTCGATCAATTCGACTGCTGCTGTAGTAGAGATGGACTGTGTTTTGCAACTGGTTCTTATGGGTCTGTTAATCGCTTGAAGATGTTCTCCATTGGGAAAGGAAGTGTGCAAGACATCAAACTGGATATAATTGGAAATTTCGAAAGTTATAGGATACCTATTTTACCTAGTGGGACAGCTAGAAGGTCAGCTATAAGAAGCAACATAAAAGGTGATGGCATAGATGATGACTTAGATTGTGACTTGAGCTCCAATCTGTTGCATGTAGCTTGGCATCCAACATCCAATTTGGTGGCTGCTGCTTCTCGAAGTAGCTTGATATTGTATCATAATGATATCATCACAGCGATTCAGTTCGACAAGCGTGGTGATCATCTAGCCATTGGAGATCAAGGAGGAGAATGCCAAAAGGTGTATGCTCAAGATCACAGATTTGTCGAGCAATCACTCTCCGGAGAGAAATCCACTTTTGTTCAAATGGCAGCAAGAATCTCTGATGCAAAATTTCTGGTTGATGGTGGCATTGATAGGCAACAGCTTATAAGTCGTGATTACTTGAATATGAAGTTTGGAACTGGAGGATGTATACTGAGGAGCACATATTCGATCAATTTGACTGCTGCTGTATTAGAGATGGACTTAGCACGCACTCCTTTTATTCTTCTTCTTCTTCTTCTTCTTGGAATTTTGCTTTCCCTTCAACGAGCTTTCATGGTTGTGGAAGCTAGCTTGAATGGTAAATTACCAAAAAGAGCTGCATCCTTTTCGTCAATATCCTCAAGCAAGAAAGATGAAAATGTAGTAGACCCCCGCAAAGTGAACAAGTATATTCCAATATGCTAA 1824 0.3964 MAAQQVSFVYVTCDNQQYVTIVSECLFYYCYDTKFSFKNHILELESEVSFSMHWAFNIMVSFLVLALGIYPVAVFRIHEPLRRPRWRSTSFCNXNLLRIFTTANASVEDVKMDTIGNTDRDDGLDYDTITAIQFEKRGDYLAIGDHGGRIVIFEKDDRKIIEGYAGNTFHAKCQKVYAQYHSSNINSISNNSDAETFISADEFRINLWNLEISDRNFNIIDMKPSNMEEPYEMITSAEFHPVHCNLLAYGSSQGLIRISDLRQAARCDRSVRLFHDRSLFRMKFPFDEVAACISDVKFLVDGIGGQQLISRDYMNMKLAELYDKDHIFDQFDCCCSRDGLCFATGSYGSVNRLKMFSIGKGSVQDIKLDIIGNFESYRIPILPSGTARRSAIRSNIKGDGIDDDLDCDLSSNLLHVAWHPTSNLVAAASRSSLILYHNDIITAIQFDKRGDHLAIGDQGGECQKVYAQDHRFVEQSLSGEKSTFVQMAARISDAKFLVDGGIDRQQLISRDYLNMKFGTGGCILRSTYSINLTAAVLEMDLARTPFILLLLLLLGILLSLQRAFMVVEASLNGKLPKRAASFSSISSSKKDENVVDPRKVNKYIPIC 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0956 607 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 316 437 IPR000009 GO:0000159|GO:0019888
Lele20g0956 607 SUPERFAMILY WD40 repeat-like 127 461 IPR036322 GO:0005515
Lele20g0956 607 SMART WD40_4 170 209 IPR001680 GO:0005515
Lele20g0956 607 SMART WD40_4 93 154 IPR001680 GO:0005515
Lele20g0956 607 SMART WD40_4 402 438 IPR001680 GO:0005515
Lele20g0956 607 SMART WD40_4 314 357 IPR001680 GO:0005515
Lele20g0956 607 SMART WD40_4 224 260 IPR001680 GO:0005515
Lele20g0956 607 Gene3D - 125 497 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0956 Lele-ChrLele20 15664349 15675405 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1058 17 21127488 21130281 Lele20g0956 20 15664349 15675405 hybridization
Lele18g0480 18 2820602 2831538 Lele20g0956 20 15664349 15675405 hybridization