Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0605 ATGTCACCCACCTCACTCTCTTCATTACACTCCTCTACTATCACTCCTCTCTCCTTCTCTTTACTCTCTCCCACCTCTTCTGCGTTGTCTTCCTCTGACCAATGTCTTTCTCTCCCACGGCTCTCCCTCCGGACTCAACCTCTCCGCTCGCCCAACCTCTTCCGCGCTACCCATTTGAAAATCAACCCAGAATCCAAGAAGGGTCTCAAAGTGAATTGTTCAATAAACGAGCCATTGAAGGTCATGATATCAGGTGCGCCTGCATCGGGCAAGGGAACTCAATGTGAATTGATTGTCCAGAAGTTTGGATTAGTGCACATATCGACTGGGGATTTGTTAAGAGCTGAAGTAGCAGCTGGGTCAGAAATTGGAAACAAAGCAAAGGAGTACATGAATGCTGGTCGCTTGGTTCCAGATGAAATCGTGACTTGTATGGTGACAGCGCGATTATCTCGTGAAGATGCAAAACAAAAAGGGTGGCTTCTTGATGGGTACCCTCGGAGTTTCGCCCAAGCAGAGGCTTTGGAACAACAGAAGATTAGGCCAGATATCTATATTGTATTAAATGTTCCTGATGAAATTCTGATCGACAGATGTGTTGGGAGAAGGATAGATCCAGTGACAGGGAAGATTTATCATATAAAAAATTTTCCACCAGAGACTGAAGAAATCAAATCAAGGCTAATCACCCGTCCTGATGACACTGAAGAAAAAGTTAAGTCCCGGCTAGAAATATACAAGCAAAATGCAGAAGCTGTTTCTTCCACTTACTCAAGCATAACAAATAAGATTGATGGAAATTGCTCCAAAGATGTAGTTTTTAAAGAAATTGACTCTCTGTTGTCACAAGTGCAAAATGCCAAAGGGAAAACAATAAAGCCAGAAAAGTTGACACCTGATATAAAGAAGGGGAAGGAACCATTAAGCCAGGAAAAGTGGAGAGGAATTCCTACTAGACTAAATAACATTCCCCATTCCAGAGAGATCAGGAAATATTTCTATGATGATGTACTGCAAGCCACAGAGAGGGCTATAAAAGATGGAAAATCTCGGTTGAAGGTGGACATCAACATTCCCGAGCTGAACCCAGAAATGGACGTTTATCGAATTGGTACTTTGATGGAACTTGTTCGAGCTCTTGCCCTTTCATTTGCTGATGATGGGAAACGTGTTAAGGTTTGTGTGCAAGGGTCAATGGGAGAAGGTGCTCTTGCTGGAATGCCACTGCAGCTTGCTGGAACCCGAAAGATCTTAGAGTTTATGGATTGGGGTGATTATGGTGCAAAAGGGACCTTTATCAATATTGGTTCCATAGGTGCTGCAGAGGTTGATGAGCAAGATGACATGTATATCTTGGTGGCTCCTCAAAATGCTGTGGGGAATTGTATTATTGATGATCTAAGAGCGATGACTGATGCTGCTAAATACAGGCCAGTTATCCTAATCAATGCAAGGCTTAAAGATTTGCCGGGTTCCAGTGGTATAATGCAAACAATGGGACGGGAGAAAAGACTTGAGTATGCAGCATCATTTGAAAGTTGCTACTTCTTTCGGCTTCTCTATTATGCTGGAACTCAGTATCCCATAATGGGAGCTATCAGGATGTCTTATCCATTCCCTTACGAGCTTTACAAGAGAGTGGATGAATCATATGGAAAGGAGAAATATGTTCTGTTGTCAACATTTCCACAACGGCCTAGTACTGACGAAATTAATGACGCCTTCCAAGGAAAACCAAGGACTGAAACTAAGAAAGCTTCTGGGATTTGGGGTTTCTTGAGTGGCATTCTTTGA 1794 0.4292 MSPTSLSSLHSSTITPLSFSLLSPTSSALSSSDQCLSLPRLSLRTQPLRSPNLFRATHLKINPESKKGLKVNCSINEPLKVMISGAPASGKGTQCELIVQKFGLVHISTGDLLRAEVAAGSEIGNKAKEYMNAGRLVPDEIVTCMVTARLSREDAKQKGWLLDGYPRSFAQAEALEQQKIRPDIYIVLNVPDEILIDRCVGRRIDPVTGKIYHIKNFPPETEEIKSRLITRPDDTEEKVKSRLEIYKQNAEAVSSTYSSITNKIDGNCSKDVVFKEIDSLLSQVQNAKGKTIKPEKLTPDIKKGKEPLSQEKWRGIPTRLNNIPHSREIRKYFYDDVLQATERAIKDGKSRLKVDINIPELNPEMDVYRIGTLMELVRALALSFADDGKRVKVCVQGSMGEGALAGMPLQLAGTRKILEFMDWGDYGAKGTFINIGSIGAAEVDEQDDMYILVAPQNAVGNCIIDDLRAMTDAAKYRPVILINARLKDLPGSSGIMQTMGREKRLEYAASFESCYFFRLLYYAGTQYPIMGAIRMSYPFPYELYKRVDESYGKEKYVLLSTFPQRPSTDEINDAFQGKPRTETKKASGIWGFLSGIL 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0605 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 283 IPR027417 -
Lele20g0605 597 TIGRFAM adk: adenylate kinase 80 281 IPR006259 GO:0004017|GO:0005524|GO:0016776
Lele20g0605 597 CDD ADK 80 273 IPR000850 GO:0005524|GO:0006139|GO:0019205
Lele20g0605 597 ProSitePatterns Adenylate kinase signature. 160 171 IPR033690 -
Lele20g0605 597 FunFam Adenylate kinase, chloroplastic 75 286 - -
Lele20g0605 597 Hamap Adenylate kinase [adk]. 79 282 IPR000850 GO:0005524|GO:0006139|GO:0019205
Lele20g0605 597 Pfam Domain of unknown function (DUF1995) 330 572 IPR018962 -
Lele20g0605 597 Gene3D - 75 293 IPR027417 -
Lele20g0605 597 Pfam Adenylate kinase 83 259 - -
Lele20g0605 597 PANTHER NUCLEOTIDE KINASE 66 279 IPR000850 GO:0005524|GO:0006139|GO:0019205
Lele20g0605 597 PRINTS Adenylate kinase signature 231 246 IPR000850 GO:0005524|GO:0006139|GO:0019205
Lele20g0605 597 PRINTS Adenylate kinase signature 160 176 IPR000850 GO:0005524|GO:0006139|GO:0019205
Lele20g0605 597 PRINTS Adenylate kinase signature 110 124 IPR000850 GO:0005524|GO:0006139|GO:0019205
Lele20g0605 597 PRINTS Adenylate kinase signature 82 95 IPR000850 GO:0005524|GO:0006139|GO:0019205
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0605 Lele-ChrLele20 13401421 13406745 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0704 17 18829644 18834013 Lele20g0605 20 13401421 13406745 hybridization
Lele18g0818 18 5126579 5131967 Lele20g0605 20 13401421 13406745 hybridization