Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0565 ATGGACAAACGGGCTGCGATGGAGGCGGAGATGAACGCAATCATCGAGCGCCTCAATCAACCCGGCGGTCCCGGGCTTTCCGGCAATCTCATTGATTCTGAGGTTTTCTTTCGATTCCGGTTATATACTTTCTTTTTTGCGCATTCCACCTGGTTTCCGGAAACTGATTGTTGCAATTCGGGATTTCCTCGGACGGATATTGATATTCCAGTTGTTCGAGCCGAGCGACATCGTCTTTCTGAGCTGCGTAATGATCACCAGGAGATCAGTGAGAAAATAAATCAAAATATTCAAATTTTACATGCAGCAAGAGTTGGAAGTAAAACGTCACCTCTCAAAGTTTCAGGTATCCTTCCACCTGCCAAGCAATGGATGTTATTATATCATGTGTTTAGAGGTGATGAAGATGTACCAAATACTCAGACCTCATCAGCTGTTGATGCTAGCTCATCAATGGATGTTGATGTGGTTGTCAGTATACCATTTGCTATGGTTGATGAGATATCTGATTCATCACCGGCTGCTGAGGATGGATTACAACTTGGAGATCAAATTTTGAAATTTGGAAGCGTGGAAGCTGGGGATAATTTACTCCAAAGGCTAGCTTCAGAGTCTCAGTCAAATTTGGGTCACGCGATTCCTGTTGTTATCATGAGGCAAGGTGCTGTGATCAACTTAACTGTCACACCTAGAACTTGGCCAGGCAGAGGTCTATTGGGCTACACCAATATGCGTGCTCCAGTTATGAATTACCTTGTCTAG 762 0.4423 MDKRAAMEAEMNAIIERLNQPGGPGLSGNLIDSEVFFRFRLYTFFFAHSTWFPETDCCNSGFPRTDIDIPVVRAERHRLSELRNDHQEISEKINQNIQILHAARVGSKTSPLKVSGILPPAKQWMLLYHVFRGDEDVPNTQTSSAVDASSSMDVDVVVSIPFAMVDEISDSSPAAEDGLQLGDQILKFGSVEAGDNLLQRLASESQSNLGHAIPVVIMRQGAVINLTVTPRTWPGRGLLGYTNMRAPVMNYLV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0565 253 Gene3D - 57 109 - -
Lele20g0565 253 Coils Coil 72 92 - -
Lele20g0565 253 FunFam 26S proteasome non-ATPase regulatory subunit 9 147 244 - -
Lele20g0565 253 SUPERFAMILY PDZ domain-like 163 243 IPR036034 GO:0005515
Lele20g0565 253 Pfam Nas2 N_terminal domain 59 102 IPR040815 -
Lele20g0565 253 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 9 1 241 IPR035269 GO:0070682
Lele20g0565 253 CDD PDZ_metalloprotease 156 230 - -
Lele20g0565 253 Gene3D - 146 243 IPR036034 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0565 Lele-ChrLele20 13158347 13160721 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0668 17 18583641 18586146 Lele20g0565 20 13158347 13160721 hybridization
Lele18g0853 18 5368916 5371426 Lele20g0565 20 13158347 13160721 hybridization