Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0406 ATGGAGAGAAGTGTGATGATATATATAGTTAGGGATGATATCTGCTATATACTGGAATTTGTATCTGGGATACTTCAGAAAGTTATTATTTATCATTTTAGTCTTTGCGCCTACCTGCAGCTTTTTATAAAGGATTTGTTTAGAAAGAAAATAGAGAAATGTGAGGGGTCATGTGAGGAGCGCCAAACGAAAAGGAAAGTCAGTGTATATCACTACATTGAATACAGAGAGAGAGAGTTGAAGTATTCGGAGGTAGCTCACGGAAAGAGAGACAGCGGAAGAAGAAGGGAAGGGATCAGAATCATGGAGACTCCACAGCAAGGGGTGGTGAAGAAGAAGGAGACGAGGGGTCGTAAACCGAAGGCCAAGGACGACAAGAAGGACGACCAGCACCAACATTCCAAGACCCCTAAAGAACACAAGAAATCTCACCCTCCTCTCTCTGTCGACGACAAGTACACCCAGTGGAAGTCCCTAGTCCCTGTCCTCTATGACTGGCTCGCTAATCACAACCTCGTTTGGCCCTCTCTCTCTTGCCGGTGGGGTCCTCAGCTCGAGCAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTTTCTGAGCAGACTGATGGCAGCGTTCCGAACACTCTTGTCATCGCAAACTGTGAGGTTGTGAAACCTAGGGTTGCAGCTGCAGAGCACATCTCACAGTTTAATGAGGAGACACGTTCACCGTTTGTAAAGAAGTATAAGACCATCATACATCCGGGAGAGGTTAATAGAATTCGGGAATTGCCAACAAATTCTAAGATAGTAGCTACTCATACAGATAGCCCTGATGTCCTCATTTGGGACGTTGAAACTCAGCCCAATCGTCATGCTGTCCTTGGAGCCACAAACTCTCGTCCGGATCTGATATTGACTGGACATCAAGACAATGCTGAATTTGCTCTTGCAATGTGCCCAACTGAACCCTATGTGCTTTCTGGAGGAAAGGACAAATCAGTGGTTTTGTGGAGTATTCAGGACCATATATCATCAGCTGCCACGGACCCAAAATCTAGTGAGTCAAAACAAAACTCTAAATCTGGAGATGGCAATGACAAAACTGCTGATGGGCCATCTGTTGGACCACGAGGCATCTTTCATGGGCATGAGGATACTGTTGAAGATGTGACTTTTTGTCCTTTTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCACGTCTCATATTATGGGATGCACGTGTTGGCTCTAGTCCTGCGGTGAAGGTTGAAAAAGCTCATAATGCTGATCTTCACTGTGTTGACTGGAATCCCAATGATGTTAATCTTATTCTCACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGACCGGCGTAATCTTATTTCTAATGGAATTGGGTCACCTATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCTGCAGAAGATGGTCTCTTAAACATTTGGGATTATGATAAGATTGGTAAAAAAGCAGAACGAACAGGAAAATCACAAAGTTCTCCCGGTTTGTTGTTCCAACATGCTGGCCATAGAGACAAGGTTGTTGACTTCCACTGGAACGCATATGATCCTTGGACAATTGTTAGTGTGTCTGATGACTGTGAAAGTACTGGTGGAGGTGGAACATTGCAGATATGGCGCATGAGCGACTTGATCTACCGACCGGAAGAGGAGGTTTTGGCAGAGCTTGAGAAATTTAAGGCTCACGTTGTGGAGTGCGCATCCAAGTCTGAAAAGTGA 1797 0.4474 MERSVMIYIVRDDICYILEFVSGILQKVIIYHFSLCAYLQLFIKDLFRKKIEKCEGSCEERQTKRKVSVYHYIEYRERELKYSEVAHGKRDSGRRREGIRIMETPQQGVVKKKETRGRKPKAKDDKKDDQHQHSKTPKEHKKSHPPLSVDDKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEETRSPFVKKYKTIIHPGEVNRIRELPTNSKIVATHTDSPDVLIWDVETQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHISSAATDPKSSESKQNSKSGDGNDKTADGPSVGPRGIFHGHEDTVEDVTFCPFSAQEFCSVGDDSRLILWDARVGSSPAVKVEKAHNADLHCVDWNPNDVNLILTGSADNSVRMFDRRNLISNGIGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDKIGKKAERTGKSQSSPGLLFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKAHVVECASKSEK 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0406 598 ProSiteProfiles Trp-Asp (WD) repeats profile. 469 502 IPR001680 GO:0005515
Lele20g0406 598 MobiDBLite consensus disorder prediction 86 148 - -
Lele20g0406 598 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 151 217 IPR022052 -
Lele20g0406 598 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 420 453 - -
Lele20g0406 598 MobiDBLite consensus disorder prediction 341 376 - -
Lele20g0406 598 SUPERFAMILY WD40 repeat-like 237 567 IPR036322 GO:0005515
Lele20g0406 598 MobiDBLite consensus disorder prediction 341 361 - -
Lele20g0406 598 MobiDBLite consensus disorder prediction 86 149 - -
Lele20g0406 598 Pfam WD domain, G-beta repeat 463 502 IPR001680 GO:0005515
Lele20g0406 598 Pfam WD domain, G-beta repeat 298 333 IPR001680 GO:0005515
Lele20g0406 598 Pfam WD domain, G-beta repeat 421 453 IPR001680 GO:0005515
Lele20g0406 598 Pfam WD domain, G-beta repeat 373 408 IPR001680 GO:0005515
Lele20g0406 598 SMART WD40_4 293 333 IPR001680 GO:0005515
Lele20g0406 598 SMART WD40_4 368 408 IPR001680 GO:0005515
Lele20g0406 598 SMART WD40_4 462 502 IPR001680 GO:0005515
Lele20g0406 598 SMART WD40_4 413 453 IPR001680 GO:0005515
Lele20g0406 598 SMART WD40_4 239 278 IPR001680 GO:0005515
Lele20g0406 598 SMART WD40_4 519 566 IPR001680 GO:0005515
Lele20g0406 598 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 469 502 - -
Lele20g0406 598 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 417 IPR001680 GO:0005515
Lele20g0406 598 Gene3D - 121 584 IPR015943 GO:0005515
Lele20g0406 598 PANTHER WD40 REPEAT FAMILY 148 581 - -
Lele20g0406 598 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 453 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0406 Lele-ChrLele20 11772823 11784684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0406 320 513 Miscellaneous Gene Families AT5G08390 23.445 7.58e-06 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g1012 18 6763640 6768901 Lele20g0406 20 11772823 11784684 hybridization