Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1012 ATGGAGACTCCACAGCAAGGAGTGGTGAAGAAGAAGGAGACGAGGGGTCGTAAACCGAAGGCCAAGGACGACAAGAAGGACGACCAGCACCAACATTCCAAGACCCCTAAAGAACACAAGAAATCTCACCCTCCTCCCTCTGTCGACGACAAGTACACCCAGTGGAAGTCCCTCGTCCCTGTCCTCTATGACTGGCTCGCTAATCACAACCTCGTTTGGCCCTCTCTCTCTTGCCGGTGGGGTCCTCAGCTCGAGCAAGCTACTTACAAGAATCGCCAGCGTCTCTACCTTTCTGAGCAGACCGATGGCAGCGTTCCGAACACTCTTGTCATCGCAAACTGTGAGGTTGTGAAACCTAGGGTTGCAGCTGCAGAGCACATCTCACAGTTTAATGAGGAGACACGTTCACCGTTTGTGAAGAAGTATAAGACCATCATACATCCGGGAGAGGTTAATAGAATTCGGGAATTGCCAACAAATTCTAAGATAGTAGCTACTCATACAGATGGCCCTGATGTCCTCATTTGGGACGTGGAAAGTCAGCCCAATCGTCATGCTGTCCTTGGAGCCACAAACTCTCGTCCAGATCTGATATTGACTGGACATCAAGACAATGCTGAATTTGCTCTTGCAATGTGCCCAACTGAACCCTATGTGCTTTCTGGAGGAAAGGACAAATCAGTGGTTTTGTGGAGTATTCAGGACCATATATCATCAGCTGCCACGGACCCAAAATCTAGTGAGTCAAAACAAAACTCTAAATCTGGGGATGGCAATGACAAAACTGCTGATGGGCCATCTATTGGACCACGAGGCATCTTTCATGGGCATGAGGATACTGTTGAAGATGTGACTTTTTGTCCTTTTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCGCGTCTCATATTATGGGATGCACGTGTTGGCTCTAGTCCTGCGGTGAAGGTTGAAAAAGCTCATAATGCTGATCTTCACTGTGTTGACTGGAATCCCAATGATGTTAATCTTATTCTCACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGACCGGCGAAATCTTATTTCTAATGGAATTGGGTCACCTATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCTGCCGAAGATGGTCTCTTAAACATTTGGGATTATGATAAGATCGGTAAAAAAACAGAACGAACAGGAAAATCACAAAGTTCTTCCGGTTTGTTGTTCCAACATGCTGGCCATAGAGACAAGGTTGTTGACTTCCACTGGAACGCATATGATCCATGGACAATTGTTAGTGTGTCTGATGACTGTGATAGTACTGGTGGAGGTGGAACATTGCAGATATGGCGCATGAGCGACTTGATCTACCGACCGGAAGAGGAGGTTTTGGCAGAGCTTGAGAAATTTAAGGCCCATGTTGTGGAATGCGCATCCAAGTCTGAAAAGTGA 1494 0.4632 METPQQGVVKKKETRGRKPKAKDDKKDDQHQHSKTPKEHKKSHPPPSVDDKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEETRSPFVKKYKTIIHPGEVNRIRELPTNSKIVATHTDGPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKSVVLWSIQDHISSAATDPKSSESKQNSKSGDGNDKTADGPSIGPRGIFHGHEDTVEDVTFCPFSAQEFCSVGDDSRLILWDARVGSSPAVKVEKAHNADLHCVDWNPNDVNLILTGSADNSVRMFDRRNLISNGIGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDKIGKKTERTGKSQSSSGLLFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCDSTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKAHVVECASKSEK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1012 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 352 - -
Lele18g1012 497 Gene3D - 21 483 IPR015943 GO:0005515
Lele18g1012 497 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 50 116 IPR022052 -
Lele18g1012 497 SMART WD40_4 192 232 IPR001680 GO:0005515
Lele18g1012 497 SMART WD40_4 361 401 IPR001680 GO:0005515
Lele18g1012 497 SMART WD40_4 312 352 IPR001680 GO:0005515
Lele18g1012 497 SMART WD40_4 138 177 IPR001680 GO:0005515
Lele18g1012 497 SMART WD40_4 418 465 IPR001680 GO:0005515
Lele18g1012 497 SMART WD40_4 267 307 IPR001680 GO:0005515
Lele18g1012 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 401 IPR001680 GO:0005515
Lele18g1012 497 Pfam WD domain, G-beta repeat 272 307 IPR001680 GO:0005515
Lele18g1012 497 Pfam WD domain, G-beta repeat 197 232 IPR001680 GO:0005515
Lele18g1012 497 Pfam WD domain, G-beta repeat 362 401 IPR001680 GO:0005515
Lele18g1012 497 Pfam WD domain, G-beta repeat 320 352 IPR001680 GO:0005515
Lele18g1012 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 316 IPR001680 GO:0005515
Lele18g1012 497 PANTHER WD40 REPEAT FAMILY 44 480 - -
Lele18g1012 497 MobiDBLite consensus disorder prediction 1 47 - -
Lele18g1012 497 MobiDBLite consensus disorder prediction 240 274 - -
Lele18g1012 497 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 352 IPR001680 GO:0005515
Lele18g1012 497 MobiDBLite consensus disorder prediction 1 51 - -
Lele18g1012 497 SUPERFAMILY WD40 repeat-like 136 466 IPR036322 GO:0005515
Lele18g1012 497 MobiDBLite consensus disorder prediction 240 260 - -
Lele18g1012 497 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 368 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1012 Lele-ChrLele18 6763640 6768901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g1012 219 413 Miscellaneous Gene Families AT5G08390 24.645 2.50e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g1012 18 6763640 6768901 Lele20g0406 20 11772823 11784684 hybridization