Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0480 ATGGATCCGAACCCCGGAACCTTCCCTATTCTCTCTTACGTCATGAGTCGTCTCCCTTCTCTGGGCTCTACTTCTCGACCTTCCACCACCGCTGAATTCGATATCGAACAACCTCACACTCTGCCGCCGCCACCCCATCTCCAGTCATCTTCTTCGCCTGATTCCGAAATTGAGGGCAAAATGCCTCACCTCACTGATCCCAAACTCTTAGCTGCCATGACCCGCGCAGTCGCCGAAGTCGCCCAGACCCGATCAGTACTCAATCTCATTGGGGAGCGACCCGACCATGAAGCCGTCGATCGTGCAAAGGACAAGCTTGCCGATATTGAAGCCCTTTTGTCCAAGCAACTGGAGGAGATTGTACTGTCTCCGAGGCCCGAGAATGTTGACATCCTTCAATGGCGAGCTCATCAAGCCGAAAAAGAGAAGGAGTACAGGGAGTTAGCGGAGAAAGAGAAGCGGCCGTATAAATCCCTGATACAGTTGGACGAGATGCACGATGCTTATGAGAAACTGCTTATGGATGCTGAGAAGAGGCTGGTGGAGATTTACGAGTCTGATGGGAAAGTAGCTGATAGTGCCGAGGGGGCGAAAGACGAGCATGTTGGGGAGGAGGTCAACGAAGAGGTTGTGGGGATACTACGGGAAGCTTATGGAAAGGGGATTGAGCGATTGGATCTTTCAGGGCGTCGGTTAAGGTTGTTGCCTGAGGCCTTTGGGCGAATTCCCGGCTTGGTTGCGCTTGATCTTTCGAACAATCAGCTCGAGGCGATCCCTGACTCAATAGCTGGGTTGCAAAGTCTTGAGGAGCTCAATGTCTCTTCAAATCTTTTGGTGTCTCTTCCAGATTCAATTGGCTTGTTACAAAAGTTGAAATTTCTGAATGTCTCTGGGAACAAGCTAAATGCCCTTCCTGATTCCATTTGTCATTGCAGGTCGTTGGTGGAGCTGGATGTAAGCTTCAATGGTCTGACATATTTGCCAACAAACATTGGACATGAACTAGTGAATTTACAGAAGCTATTAATTCAATTGAACAAGATTCGGTCTCTTCCGTCGTCTGTTTGTGAAATGAGGGCCTTGCGCTATCTAGATGCTCATTTTAATGAGCTTCATGGGCTTCCTACTGCAATAGGGAAATTGACCAATCTTGAATTTCTCAACCTGAGCAGTAATTTCAGTGACCTTAGAGAACTTCCCGATACATTTGGCGATCTGACTAACCTGAGGGAGTTGGATCTCAGCAACAATCAGATTCATGCACTTCCTGATACATTTGGCCGCCTGGACAATCTGGTCAAGCTCAACTTGGAGCAGAACCCTCTGGAATTGCCACCGAAGGAAATTGTAAATGAAGGGGTTGAGGCCATAAAAACTTTTGTGGCGAAGAGGTGGGTTGATATATTGCTTGAGGAAGAAAGGAAAAGCCGTGAAACCCAAGAACTGGCAGAGGCTGGCTGGTTAACACGAAGCACCTCCTGGTTGAAGAATTATGTATCTAGTGTTTCTGGAAGTGTTACCGAGTATCTGGGATCACCTAGAACTCCAAGAGATCCTTGTCTTGATCAGCAACTTTAA 1578 0.4791 MDPNPGTFPILSYVMSRLPSLGSTSRPSTTAEFDIEQPHTLPPPPHLQSSSSPDSEIEGKMPHLTDPKLLAAMTRAVAEVAQTRSVLNLIGERPDHEAVDRAKDKLADIEALLSKQLEEIVLSPRPENVDILQWRAHQAEKEKEYRELAEKEKRPYKSLIQLDEMHDAYEKLLMDAEKRLVEIYESDGKVADSAEGAKDEHVGEEVNEEVVGILREAYGKGIERLDLSGRRLRLLPEAFGRIPGLVALDLSNNQLEAIPDSIAGLQSLEELNVSSNLLVSLPDSIGLLQKLKFLNVSGNKLNALPDSICHCRSLVELDVSFNGLTYLPTNIGHELVNLQKLLIQLNKIRSLPSSVCEMRALRYLDAHFNELHGLPTAIGKLTNLEFLNLSSNFSDLRELPDTFGDLTNLRELDLSNNQIHALPDTFGRLDNLVKLNLEQNPLELPPKEIVNEGVEAIKTFVAKRWVDILLEEERKSRETQELAEAGWLTRSTSWLKNYVSSVSGSVTEYLGSPRTPRDPCLDQQL 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0480 525 SMART LRR_typ_2 312 334 IPR003591 -
Lele19g0480 525 SMART LRR_typ_2 335 358 IPR003591 -
Lele19g0480 525 SMART LRR_typ_2 242 264 IPR003591 -
Lele19g0480 525 SMART LRR_typ_2 265 287 IPR003591 -
Lele19g0480 525 SMART LRR_typ_2 429 452 IPR003591 -
Lele19g0480 525 SMART LRR_typ_2 381 405 IPR003591 -
Lele19g0480 525 SMART LRR_typ_2 288 311 IPR003591 -
Lele19g0480 525 SMART LRR_typ_2 406 428 IPR003591 -
Lele19g0480 525 Coils Coil 159 179 - -
Lele19g0480 525 ProSiteProfiles Leucine-rich repeat profile. 408 429 IPR001611 GO:0005515
Lele19g0480 525 PRINTS Leucine-rich repeat signature 245 258 - -
Lele19g0480 525 PRINTS Leucine-rich repeat signature 406 419 - -
Lele19g0480 525 PANTHER LEUCINE-RICH REPEAT-CONTAINING 291 451 - -
Lele19g0480 525 SUPERFAMILY L domain-like 219 446 - -
Lele19g0480 525 MobiDBLite consensus disorder prediction 506 525 - -
Lele19g0480 525 Coils Coil 99 119 - -
Lele19g0480 525 FunFam Plant intracellular Ras-group-related LRR protein 2 330 502 - -
Lele19g0480 525 FunFam Plant intracellular Ras-group-related LRR protein 9 141 326 - -
Lele19g0480 525 MobiDBLite consensus disorder prediction 20 35 - -
Lele19g0480 525 SMART LRR_bac_2 406 425 - -
Lele19g0480 525 SMART LRR_bac_2 381 402 - -
Lele19g0480 525 SMART LRR_bac_2 311 330 - -
Lele19g0480 525 SMART LRR_bac_2 358 377 - -
Lele19g0480 525 SMART LRR_bac_2 242 261 - -
Lele19g0480 525 SMART LRR_bac_2 265 284 - -
Lele19g0480 525 SMART LRR_bac_2 288 307 - -
Lele19g0480 525 SMART LRR_bac_2 335 354 - -
Lele19g0480 525 MobiDBLite consensus disorder prediction 20 62 - -
Lele19g0480 525 Gene3D Ribonuclease Inhibitor 351 462 IPR032675 -
Lele19g0480 525 Gene3D Ribonuclease Inhibitor 113 350 IPR032675 -
Lele19g0480 525 Pfam Leucine rich repeat 400 442 IPR001611 GO:0005515
Lele19g0480 525 Pfam Leucine rich repeat 223 278 IPR001611 GO:0005515
Lele19g0480 525 ProSiteProfiles Leucine-rich repeat profile. 267 288 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0480 Lele-ChrLele19 2708513 2711313 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0480 224 448 Receptor kinase-like Gene Family AT5G07180 32.766 1.15e-11 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1082 17 21282452 21285243 Lele19g0480 19 2708513 2711313 hybridization
Lele18g0458 18 2670677 2674779 Lele19g0480 19 2708513 2711313 hybridization