Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0458 ATGGTAACAGGAACGACGTTGGAATCGACCTTGTCGATGTACTGTGTCATGTACGCCGGAACGCTTCCCTTCTGCATTCGCCGGCATACTTCACACATTCAAACCTCTCTAGAATTACTTCCCAGCGCCATGGATCCGAACCCCGGAACCTTCCCTATTCTCTCCTACGTCATGAGTCGTCTCCCTTCCCTGGGCTCTTCTTCTGCACCTTCCACCGCCGCGGAATTCGATATCGAACAACCTCACCCTCTGCCGCCTCCATCCCATCTTCACTCATCTTCTCCGCCTGAATCCGAAATTGAGGGCAAAATGCCTCACCTTACTGATCCCAAACTCTTCGCTGCCATGATCCACGCAGTCTCCGAAGTCTCCCAGACCCGATCAGTACTCAATCTCATTGGGGACCGACCCGACCATGAGGCCGTCGATCGTGCAAAGGCCAAGCTTGCGGATATTGAAGCCCTTTTGTCCAAGCAACTGGAGGAGATTGTGCTGTCCCCGAGGCCCGAGAATGTTGACATCCTTCAATGGCGAGCTCATCAAGCCGAAAAAGAGAAGGAGTGCAGGGAGTTAGCGGAGAAAGAGAAGCGGCCGTATAAATCACTGATACAGTTGGACGATATGCACGATGCTTATGAGAAACTGCTTATGGACGCTGAGAAGAGGCTGGTGGAAATTTACGAGTCTGATGGGAAAGTAGCTGATAATGCCGGGGGTGAGAAAGACGAGCATGTTGGGGAGGAGGTTAACGAAGAGGTTGTGGGGATACTACGGGAGGCTTATGGAAAGGGGATTGAGCGATTGGATCTTTCAGGGCGGCGGTTAAGGTTGTTGCCTGAGGCCTTTGGGCGAATTCCTGGCTTGGTTGCGCTTGATCTTTCGAACAATCAGCTCGAGGCTATCCCTGACTCAATAGCTGGGTTGCAAAGTCTCGAGGAGCTTAATGTCTCTTCAAATCTTTTGGTGTCTCTTCCAGATTCAATTGGCTTGTTACAAAAGTTGAAATTTCTGAATGTCTCTGGGAACAAGCTAAATGCCCTTCCTGATTCCATCTGTCACTGCAGGTCATTGGTGGAGCTGGATGTAAGCTTCAATGGTCTGACATATTTGCCAACAAACATTGGACCTGAACTAGTGAACTTACAGAAGCTGTTAATTCAATTGAACAAGATTCGGTCTCTTCCGTCATCTATTTGTGAAATGAGGGCCTTACGCTATGTAGATGCTCATTTTAATGAGCTTCATGGGCTTCCTATTGCAATAGGGAAATTGACCAATCTTGAATTTCTCAACCTGAGCAGTAATTTCAGTGACCTTAGAGAACTTCCTGATACCTTTGGTGATCTGACTAACCTGAGGGAACTGGATCTCAGCAACAATCAGATTCATGCACTTCCTGATACATTTGGCCGCCTCGACAATCTGGTCAAGCTCAACTTGGAGCAGAACCCTCTGGAATTGCCACCAAAGGAAATTGTAAATGAAGGGGTTGAGGCCATAAAAACTTTTATGGTGAAGAGGTGGGTTGATATATTGCTTGAGGAAGAAAGGAAAAGCCGTGAAAGCCAAGAACTGGCAGAGGCTGGCTGGTTAACGCGAAGCACCTCCTGGTTGAAGAATTATGTATCTAGTGCTTCCGGAAGTGTTACCGAGTATCTTGGATCACCCAGGACTCCAAGAGATCCTTGTCTTGATCAGCAGCTTTAA 1707 0.481 MVTGTTLESTLSMYCVMYAGTLPFCIRRHTSHIQTSLELLPSAMDPNPGTFPILSYVMSRLPSLGSSSAPSTAAEFDIEQPHPLPPPSHLHSSSPPESEIEGKMPHLTDPKLFAAMIHAVSEVSQTRSVLNLIGDRPDHEAVDRAKAKLADIEALLSKQLEEIVLSPRPENVDILQWRAHQAEKEKECRELAEKEKRPYKSLIQLDDMHDAYEKLLMDAEKRLVEIYESDGKVADNAGGEKDEHVGEEVNEEVVGILREAYGKGIERLDLSGRRLRLLPEAFGRIPGLVALDLSNNQLEAIPDSIAGLQSLEELNVSSNLLVSLPDSIGLLQKLKFLNVSGNKLNALPDSICHCRSLVELDVSFNGLTYLPTNIGPELVNLQKLLIQLNKIRSLPSSICEMRALRYVDAHFNELHGLPIAIGKLTNLEFLNLSSNFSDLRELPDTFGDLTNLRELDLSNNQIHALPDTFGRLDNLVKLNLEQNPLELPPKEIVNEGVEAIKTFMVKRWVDILLEEERKSRESQELAEAGWLTRSTSWLKNYVSSASGSVTEYLGSPRTPRDPCLDQQL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0458 568 FunFam Plant intracellular Ras-group-related LRR protein 9 184 369 - -
Lele18g0458 568 SUPERFAMILY L domain-like 262 489 - -
Lele18g0458 568 MobiDBLite consensus disorder prediction 68 104 - -
Lele18g0458 568 SMART LRR_bac_2 354 373 - -
Lele18g0458 568 SMART LRR_bac_2 308 327 - -
Lele18g0458 568 SMART LRR_bac_2 331 350 - -
Lele18g0458 568 SMART LRR_bac_2 449 468 - -
Lele18g0458 568 SMART LRR_bac_2 285 304 - -
Lele18g0458 568 SMART LRR_bac_2 424 445 - -
Lele18g0458 568 SMART LRR_bac_2 378 397 - -
Lele18g0458 568 Gene3D Ribonuclease Inhibitor 389 505 IPR032675 -
Lele18g0458 568 PRINTS Leucine-rich repeat signature 449 462 - -
Lele18g0458 568 PRINTS Leucine-rich repeat signature 288 301 - -
Lele18g0458 568 Coils Coil 142 162 - -
Lele18g0458 568 Coils Coil 202 222 - -
Lele18g0458 568 SMART LRR_typ_2 285 307 IPR003591 -
Lele18g0458 568 SMART LRR_typ_2 449 471 IPR003591 -
Lele18g0458 568 SMART LRR_typ_2 378 401 IPR003591 -
Lele18g0458 568 SMART LRR_typ_2 308 330 IPR003591 -
Lele18g0458 568 SMART LRR_typ_2 472 495 IPR003591 -
Lele18g0458 568 SMART LRR_typ_2 424 448 IPR003591 -
Lele18g0458 568 SMART LRR_typ_2 331 354 IPR003591 -
Lele18g0458 568 SMART LRR_typ_2 355 377 IPR003591 -
Lele18g0458 568 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 264 384 - -
Lele18g0458 568 Gene3D Ribonuclease Inhibitor 203 387 IPR032675 -
Lele18g0458 568 MobiDBLite consensus disorder prediction 549 568 - -
Lele18g0458 568 FunFam Plant intracellular Ras-group-related LRR protein 2 373 545 - -
Lele18g0458 568 ProSiteProfiles Leucine-rich repeat profile. 451 472 IPR001611 GO:0005515
Lele18g0458 568 Pfam Leucine rich repeat 443 485 IPR001611 GO:0005515
Lele18g0458 568 Pfam Leucine rich repeat 266 321 IPR001611 GO:0005515
Lele18g0458 568 ProSiteProfiles Leucine-rich repeat profile. 310 331 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0458 Lele-ChrLele18 2670677 2674779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0458 288 490 Receptor kinase-like Gene Family AT5G07180 31.624 9.68e-13 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0458 18 2670677 2674779 Lele19g0480 19 2708513 2711313 hybridization
Lele18g0458 18 2670677 2674779 Lele20g0975 20 15819357 15822161 hybridization