Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0599 ATGAGTCAGGTATTCGACGGGTACGAGCGTCAATACTGTGAACTATCGGCTAATCTTTCCCGGAAATGCGCGGCGGCGTCTGCCCTTGATGGAGAGAAGAAGAAGCAGAAACTTTCTGACATCAATGATGGACTTGATGAAGCTGACACATTGATTCGGAAAATGGACCTTGAGGCCAGGAGCTTGCAGCCAAATATAAAGGCAACGCTTCTTGCCAAGTTAAGGGAATATAAAACTGATCTCAACACTTTGAAAAGTGAAGTTAAGAGAATCTCATCAGCTAATACCAACCTCTACATGACGGCACGAGATGAGCTGGAGTTAGGAGACGTTGATGCACTAATGGTATCAAATGATCAAAAAGGAAGACTGTTGATGTCAACAGAGAGGTTAAATCAGTCCACTGAGAGAATAAAAGCAAGTAGAAGAACACTGCTGGAGACTGAGGAGCTTGGAGTCTCTGTCCTCCAAGACCTTCATCAACAACGCCAATCCCTACTCCATGCCCATCAAACGCTCCATGGGGTAGATGATAACATCAGCAAAAGCAAGAAGATTTTGGCATCAATGTCAAAAAGAATGAGCAGGAATAAATGGATTGTTGGCTCCTTTATCATAGCGCTGGTCCTAGCAATTCTATTGATCTTGTATTTTAAGCTTTCTCGCTAG 669 0.435 MSQVFDGYERQYCELSANLSRKCAAASALDGEKKKQKLSDINDGLDEADTLIRKMDLEARSLQPNIKATLLAKLREYKTDLNTLKSEVKRISSANTNLYMTARDELELGDVDALMVSNDQKGRLLMSTERLNQSTERIKASRRTLLETEELGVSVLQDLHQQRQSLLHAHQTLHGVDDNISKSKKILASMSKRMSRNKWIVGSFIIALVLAILLILYFKLSR 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0599 222 CDD SNARE_Vti1 128 187 - -
Lele18g0599 222 FunFam Vesicle transport through interaction with t-SNAREsB 118 198 - -
Lele18g0599 222 Pfam Vesicle transport v-SNARE protein N-terminus 12 90 IPR007705 GO:0006886|GO:0016020
Lele18g0599 222 Gene3D - 118 198 - -
Lele18g0599 222 SUPERFAMILY t-snare proteins 6 92 IPR010989 GO:0016020|GO:0016192
Lele18g0599 222 Coils Coil 67 94 - -
Lele18g0599 222 Gene3D - 1 97 IPR038407 -
Lele18g0599 222 PIRSF Membrin-2 1 219 IPR027027 GO:0005484|GO:0005794|GO:0016192
Lele18g0599 222 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 9 217 - -
Lele18g0599 222 Pfam Snare region anchored in the vesicle membrane C-terminus 129 194 - -
Lele18g0599 222 FunFam Vesicle transport through interaction with t-SNAREs homolog 1A 1 98 - -
Lele18g0599 222 SUPERFAMILY SNARE fusion complex 131 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0599 Lele-ChrLele18 3576407 3578151 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0599 18 3576407 3578151 Lele19g0630 19 3630354 3632525 hybridization
Lele18g0599 18 3576407 3578151 Lele20g0821 20 14924756 14926475 hybridization