Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele16g1889 | ATGAATAGCATTAGAGACGCATTTGACCGTGTATCTAAGAAGCAAAAGTTATCTACTTCTAAGTTCCAAGAAGTCATTGATCAGGTGGGGCTTGAAATTGAACAGGCTTTGGCGAAAATTCAGTCAGCTCAAGACTCAGCCCCTGTAGACCAGAAATCTATACTTACAGATCTTAAGTTTAAACTAAATGCTATTGGGGCGCTTCAACAGTTAGAAGGACCACAGAAAGAATTGAACATAAGTCTTACCAAGTACCAAAAACTTCTGGAGAAATCCTTAAATCCTGATGTATCCAAGGCATACAGAAATGTTGACTTCGACTTTCACATTGTGAATCAGATTATTGCAAACCATTTTTACCGTCAAGGGCTGTTTGATCTTGGAGATAGAATTATAAATGAGGCTGGGGAATTAAATTCAAATTCACTAAGATCTCAATTCCTGGAAATGCATCAGATTCTTGAAGCTATGAGAGTTAAGAACCTTCAACCTGCTCTCGCATGGATCTCTGCCAACCAAGCTAAACTTGCCCAGAGTGGTTCCAATCTCGAGCTTAAGCTTCATACGATGCAGTTTGTAGAGGTCTTGCAAAATGGAACTCGAGCTGATGCCTTAAAATATGCCCGAACTTATCTTGCTCCTTTTGCTTCCCTCCACAAGGATGAGTTCCAAAAGCTTGTGGGTTGCCTCTTGTATGCAGGAAGGCTTGACAGCTCCCCTTATTCTGAGTTGATGTCCCAAATCCATTGGGAGAAGACTACTGAAGAGCTGACCCGGCAGTTCTGCATTCTCCTGGGGCAGTCCTACGAGAGCCCATTGAATGTGGCAGTTGCAGCCGGAGTTGAAGGGTTGCCTACACTCTTGAAGCTGGCAAATGTAATGGCTGCAAAGAAGCAAGAGTGGCAGGCAATGAAACAGTTGCCAGTGCCCGTAGACCTGGGGAAGGAATTTAAGTTTCATTCTATTTTTGTCTGCCCTGTGAGTCGGGATCAAGCGAGTGAAGAGAATCCTCCAATGTTGCTTCCATGTTTACATGTTCTTTGCAAGCAATCAATCATGAAGTTGTCGAAAAGCAGCACCCGAACATTCAAGTGTCCTTACTGTCCTGCACAAGCTACAGTTGCACAGTGCAGACAGATCTATTTCTGA | 1149 | 0.4334 | MNSIRDAFDRVSKKQKLSTSKFQEVIDQVGLEIEQALAKIQSAQDSAPVDQKSILTDLKFKLNAIGALQQLEGPQKELNISLTKYQKLLEKSLNPDVSKAYRNVDFDFHIVNQIIANHFYRQGLFDLGDRIINEAGELNSNSLRSQFLEMHQILEAMRVKNLQPALAWISANQAKLAQSGSNLELKLHTMQFVEVLQNGTRADALKYARTYLAPFASLHKDEFQKLVGCLLYAGRLDSSPYSELMSQIHWEKTTEELTRQFCILLGQSYESPLNVAVAAGVEGLPTLLKLANVMAAKKQEWQAMKQLPVPVDLGKEFKFHSIFVCPVSRDQASEENPPMLLPCLHVLCKQSIMKLSKSSTRTFKCPYCPAQATVAQCRQIYF | 382 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele16g1889 | 382 | Pfam | CTLH/CRA C-terminal to LisH motif domain | 146 | 287 | IPR024964 | - | |
| Lele16g1889 | 382 | SMART | ring_2 | 325 | 368 | IPR001841 | - | |
| Lele16g1889 | 382 | ProSiteProfiles | C-terminal to LisH (CTLH) motif profile. | 146 | 203 | IPR006595 | - | |
| Lele16g1889 | 382 | CDD | dRing_Rmd5p_like | 323 | 370 | IPR037683 | - | |
| Lele16g1889 | 382 | Coils | Coil | 26 | 46 | - | - | |
| Lele16g1889 | 382 | FunFam | Regulator of gluconeogenesis Rmd5 | 317 | 381 | - | - | |
| Lele16g1889 | 382 | SUPERFAMILY | RING/U-box | 319 | 380 | - | - | |
| Lele16g1889 | 382 | ProSiteProfiles | Gid-type RING finger profile. | 325 | 368 | IPR044063 | GO:0061630 | |
| Lele16g1889 | 382 | SMART | ctlh | 146 | 203 | IPR006595 | - | |
| Lele16g1889 | 382 | SMART | toby_final6 | 199 | 293 | IPR013144 | - | |
| Lele16g1889 | 382 | PANTHER | MACROPHAGE ERYTHROBLAST ATTACHER-RELATED | 1 | 381 | IPR045098 | GO:0004842|GO:0043161 | |
| Lele16g1889 | 382 | Pfam | RING-type zinc-finger | 325 | 366 | IPR027370 | - | |
| Lele16g1889 | 382 | ProSiteProfiles | Zinc finger RING-type profile. | 325 | 368 | IPR001841 | - | |
| Lele16g1889 | 382 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 315 | 381 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele16g1889 | Lele-ChrLele16 | 11316089 | 11317237 | Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele16g1889 | 16 | 11316089 | 11317237 | Lele16g1889 | 16 | 11316089 | 11317237 | ECH | |
| Lele13g0620 | 13 | 18377017 | 18378171 | Lele16g1889 | 16 | 11316089 | 11317237 | hybridization | |
| Lele14g0524 | 14 | 16901163 | 16902317 | Lele16g1889 | 16 | 11316089 | 11317237 | hybridization |