Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele13g0620 ATGGAGCTGAATAGCATTAGAGATGCATTTGACCGTGTATCTAAGAAGCAAAAGTTATCTACTTCTAAGTTCCAAGAAGTCATTGATCAGGTGGGACTTGAAATTGAACAGGCTTTGGCGAAAATTCAGTCAGCTCAAGACTCAGCCCCTGTAGACCAGAAATCTATACTTACAGATCTTAAGTTTAAACTAAATGCTATTGGGGCGCTTCAACAGTTAGAAGGACCACAGAAAGAATTGAACATAAGTCTTACCAAGTACCAAAAACTTCTGGAGAAATCCTTAAATCCTGATGTATCCAAGGCATACAGAAATGTTGACTTTGACTTTCACATCGTGAATGAGATTACTGCAAACCATTTTTACCGCCAAGGGCTATTTGATCTTGGAGATAGCATCATAAATGAGGCTGGGGAATTAAATTCAAAGTCACTAAGATCTCAATTCCTGGAAATGCATCAGATTCTTGAAGCTATGAGAGTTAAGAACCTTCAACCTGCTCTCACATGGATCTCTGCCAACCAAGCTAAACTTGCCCAAAGTGGTTCCAATCTCGAGCTTAAGCTTCATACGCTACAGTTTGTAGAGGTCTTGCAAAATGGAACTCGAGCCGATGCCTTAAAATATGCCCGAACTTATCTTGCTCCTTTTGCTTCCCTCCACAAGGATGAGTTCCAAAAGCTTATGGGTTGCCTCTTGTATGCAGGAAGGCTTGACAGCTCCCCTTATTCTGAGCTGATGTCTCAAATCCATTGGGAGAGGACTACTGAAGAGCTGACACGGCAGTTCTGCATTCTCCTGGGACAGTCCTATAAGAGCCCATTGAGTGTGGCAGTTGCCGCCGGAGTTGAAGGGTTGCCTACACTCCTGAAGCTGGCAAATGTAATGGCTGCAAAGAAGCAAGAGTGGCAAGCAATGAAACAGTTGCCTGTGCCCGTGGACCTGGGGAAGGAATTTCAGTTTCATTCTATTTTTGTCTGCCCTGTGAGTCGGGATCAAGCAAGTGAAGAGAATCCTTCAATGTTGCTTCCATGTTTGCATGTTCTTTGCAAGCAATCAATCATGAAGTTGTCAAAAAGCAGCACCCGAACGTTCAAGTGCCCTTACTGTCCAGCAGAAGCCACAGTTGCGCAGTGCAGACAGATCTATTTCTGA 1155 0.4372 MELNSIRDAFDRVSKKQKLSTSKFQEVIDQVGLEIEQALAKIQSAQDSAPVDQKSILTDLKFKLNAIGALQQLEGPQKELNISLTKYQKLLEKSLNPDVSKAYRNVDFDFHIVNEITANHFYRQGLFDLGDSIINEAGELNSKSLRSQFLEMHQILEAMRVKNLQPALTWISANQAKLAQSGSNLELKLHTLQFVEVLQNGTRADALKYARTYLAPFASLHKDEFQKLMGCLLYAGRLDSSPYSELMSQIHWERTTEELTRQFCILLGQSYKSPLSVAVAAGVEGLPTLLKLANVMAAKKQEWQAMKQLPVPVDLGKEFQFHSIFVCPVSRDQASEENPSMLLPCLHVLCKQSIMKLSKSSTRTFKCPYCPAEATVAQCRQIYF 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele13g0620 384 CDD dRing_Rmd5p_like 325 373 IPR037683 -
Lele13g0620 384 SMART ctlh 148 205 IPR006595 -
Lele13g0620 384 Pfam RING-type zinc-finger 327 368 IPR027370 -
Lele13g0620 384 SUPERFAMILY RING/U-box 321 382 - -
Lele13g0620 384 SMART toby_final6 201 295 IPR013144 -
Lele13g0620 384 ProSiteProfiles Zinc finger RING-type profile. 327 370 IPR001841 -
Lele13g0620 384 FunFam Regulator of gluconeogenesis Rmd5 319 383 - -
Lele13g0620 384 Coils Coil 28 48 - -
Lele13g0620 384 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 2 383 IPR045098 GO:0004842|GO:0043161
Lele13g0620 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 383 IPR013083 -
Lele13g0620 384 Pfam CTLH/CRA C-terminal to LisH motif domain 148 289 IPR024964 -
Lele13g0620 384 ProSiteProfiles Gid-type RING finger profile. 327 370 IPR044063 GO:0061630
Lele13g0620 384 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 148 205 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele13g0620 Lele-ChrLele13 18377017 18378171 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g0620 13 18377017 18378171 Lele13g0620 13 18377017 18378171 ECH
Lele13g0620 13 18377017 18378171 Lele15g1862 15 11397146 11398300 hybridization
Lele13g0620 13 18377017 18378171 Lele16g1889 16 11316089 11317237 hybridization