Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0721 ATGTCAAAGCTCCAATTGCATCTGACCTCTAATTGTAGGTGATCCGGTGGCTCCCTCCTTCTGAATCTGAACCTACCTCCCCTTCCTTCTGATCTCGAATACGCGCTTTCGTCTGGGTCATCAAGATTGACGCTCCATAAGATGGGAGGTGGATTTAGAGTGCTTCACCTAGTCAGACCATTTCTCTCTTTTCTGCCTGAAGTTCAGACTGCGGACAGGAAAATTCCATTTAGGGAGAAGGTCATATATACTGTAATTTCTCTCTTCATTTTCCTAGTTTGTAGTCAGCTCCCTCTCTATGGAATACACTCGACGACTGGTGCAGATCCATTCTATTGGATGCGTGTTATTCTTGCTTCAAACCGTGGAACTGTTATGGAGCTTGGAATCACCCCCATTGTGACATCTGGGCTGGTGATGCAACTGCTTGCTGGGTCAAAGATCATTGAAGTAGACAACAATGTCCGTGAAGATCGTGCCCTCTTAAACGGAGCACAGAAGCTGCTTGGTATCTTGATAGCTGTTGGAGAGGCAGTTGCCTATGTTCTTTCTGGGATGTATGGAAGTGTGGGCCAACTTGGGGTAGGGAATGCCATACTCATCATCGTTCAGCTTTGCTTTGCTGGTATCATTGTGATTTGCTTAGATGAGCTTCTTCAAAAAGGATATGGCCTGGGTTCTGGAATTTCCCTATTCATTGCAACTAATATCTGTGAAAATATCATATGGAAGGCATTTAGTCCCACCACCATTAACAGTGGACGTGGTGCTGAATTTGAGGGTGCTGTTATTGCTCTATTCCATTTGTTGATAACTAGAACTGACAAAGTTCGGGCTCTACGTGAGGCATTTTACAGGCAGAATCTTCCTAACGTGACAAATCTTCTTGCTACTGTTTTGATCTTCTTAATTGTGATATACTTCCAAGGTTTCCGTGTGGTTTTGCCTGTAAGATCAAAGAATGCCCGTGGACAGCAGGGTTCATATCCTATTAAACTATTTTATACCTCTAACATGCCCATTATTCTCCAGTCTGCTCTAGTTTCCAATCTGTACTTTATCTCTCAGCTGCTTCACCGAAAGTACAGTGGAAACTTCTTCGTGAACTTGTTGGGCAAATGGAAGGAAACTGAATATGGAGGTGGTCAGTCTATTCCTGTGGGCGGTATTGCATATTACATTACAGCACCATCTAGCTTAGCTGATATGGCAGCCAATCCTTTCCATGCTTTGTTCTATTTGGTGTTCATGTTGTCAGCCTGTGCCTTGTTCTCTAAAACTTGGATTGAAGTCTCTGGATCATCTGCTAAAGATGTTGCCAAACAATTGAAGGAGCAACAAATGGTGATGCCGGGGCACAGGGAGTCAAACTTGCAGAAGGAGCTGAACCGATATATCCCGACAGCCGCGGCATTTGGAGGGATGTGCATTGGTGCACTGACCGTGTTGGCTGATTTCATGGGGGCAATTGGATCTGGCACAGGAATTTTGCTTGCAGTGACCATTATTTATCAGTACTTCGAGACATTCGAGAAGGAAAGAGCCAGCGAGCTTGGTTTCTTTGGTTTCTAA 1572 0.444 MSKLQLHLTSNCRXSGGSLLLNLNLPPLPSDLEYALSSGSSRLTLHKMGGGFRVLHLVRPFLSFLPEVQTADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIVQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKNARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFFVNLLGKWKETEYGGGQSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSAKDVAKQLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGMCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFGF 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0721 523 PIRSF SecY_Sec61alpha 55 518 IPR002208 GO:0015031|GO:0016020
Lele12g0721 523 Pfam Plug domain of Sec61p 89 123 IPR019561 -
Lele12g0721 523 FunFam Transport Sec61 subunit alpha isoform 2 56 521 - -
Lele12g0721 523 SUPERFAMILY Preprotein translocase SecY subunit 57 513 IPR023201 -
Lele12g0721 523 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 78 514 IPR002208 GO:0015031|GO:0016020
Lele12g0721 523 Pfam SecY 124 506 IPR002208 GO:0015031|GO:0016020
Lele12g0721 523 Gene3D SecY subunit domain 56 521 IPR023201 -
Lele12g0721 523 ProSitePatterns Protein secY signature 1. 124 143 IPR030659 -
Lele12g0721 523 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 65 517 IPR002208 GO:0015031|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0721 Lele-ChrLele12 15360679 15364590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0721 48 523 Miscellaneous Gene Families AT2G34250 93.067 0.0 909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele12g0721 12 15360679 15364590 Lele12g0721 12 15360679 15364590 ECH
Lele09g0603 09 4604892 4607429 Lele12g0721 12 15360679 15364590 hybridization
Lele10g0551 10 4044881 4047615 Lele12g0721 12 15360679 15364590 hybridization