Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele12g0693 ATGAGAAACATTTCAAAACCAGCATGCTTCATCTTCATTCTTCTTCTAGTAGCAGTTCTTGAGGTTGAAGGCCGTTATCTGCAAACCAGAACTTCTGCATTGTTGACTTCAGATGGAGTTGACGAGGAGGATGGTGTTCAACCCCAGAAGAATCCTCACTTGTTTCTCAGAGGGGATACCAGAAAAACCGAACATTTTGAAGACAAGTGTGAGCAAATGTACGGCTTCTTGCCCTGTTCAACTAACACATTTGGTCATCTGTTTCTGATTCTGGTCTATGAGTTCTTGTTGTTCCATGGAGAATCATACTTGGCTTCTGGGGGTGAGCAAATCTTCAAGATTCTTGGCCCTGGGCTTTTCGGTGCAAGTGCCTTTGATCTTCTTTGTGCCCTTCCTGAGTCTCTGATTCTTCTCGTTACTGGGCTTTCTACAGAGACAAAGGAGGGTGCACAAGAGTATGCTTCCACTGGAGTTGGCATATTGGCTGGATCATCCATCTTACTCCTCACAATAGTTTGGGGAACCTGTGTCATCACTGGCAGGCAAAACTTGAAAACTGACTCATCAAGGCCTAAATCTTCTCATTGTTCAAATTCGTCAAGTTCAACCCCTAAAGAATTATTAGTTGGGTCTGGGATTACTATGGATAAAGAGACAAAGGAAATGGCAAGAATCATGGTTCTTTCAGTTATACCACTCATAATTATGCAGATTCCCAGTGTGTTTAGATTCTCTTCAGTGCTTCGCTCTGTGACCTTGATGATTGCTCTTACCGTTACTGTCATTTTTGTTCTCTCATACTTCATTTATCAGATATTTAAACCACATATAGAGAAAACAAGGCTAGAATACATAAAGCATCATGATTTAATACTGAGAATTTTCGACCATGTCGAAAAGCAAACCCTTCAAAAGATCCTCACTGAGGATGGATCTCCCAATGTGGCAGCCATTAATGGGCTATATAACGAAATTAGCAGTCAACACGGTGGAGAGAGGAATTTATCAGCTTCTGAAATGAAAGAGCTTCTTCTCAAGAACAAATTAACTGGGACAAACATCTCAGAGGAACAAGTTGAAGCCATGTTAAGAGTGTTTGATATCAATGGTGACCAAATTATAACCAAGGAAGAGTTTGTCAATGGATTAACACAATGGCTTGAGCAAACAAAACATGCTTTGGATAAACAATACATACCAAGAAAGTCACTCCAGAACATTTATCAGGGTTTTCTCAAGCCATGGATGGAACACATGAGAAAAGAACGTGAGATGAAGGGACATCTTGTATCTGAAATCTTAAGGCATGCTCAGAGTGATACGGTGGTTAGGCAGCTTCTCCATGATGATGGAACCGCGGATGAGTCTGCCATAAGAAGGTTGTTTGAGGAAGTTGATGGCAATAGAGATAATTGTGTTTCTCAATCCGAGTTAAGGAAACTAGTGGCCAACATGCACTTTGGTGAGGGAGTGAATGAGGAGGAAGCAGTCAAGAAAATAATTCAAGATTTTGATATAAACAGTGACAATGTGATTACTAAGGAAGAATTTGTGGATGGAATCACAAAATGGGTGCTTTCATCTTCCAGACAATCTCCACACTCAAAACCTCTGCATCATGAAGAAGAAAATCATCAAACCTGGGAATATGTAGAGAAGGTTGTGGAAGAGAAGCATCAGCACAAAGGAATACATGGATGGACGATGGCTATAATAAATGTGGTTTTAGGAATCACTATATTATCTATTCTTGCAGAGCCATTAGTAGACAGTGTCCAGGCATTTTCTGCAGAAGCAGGAATCCCATCTTTCTTTGCCTCTTTCATTTTAGTTCCTCTGGCCACAAATTTTAGAGAAGCAACCTCAGCCATCAAAGAAGCTAGCCACAAGAAGAAAAGTAACACTTCTCACGCAATCTATGAGATTTATGGAGCAGTATTTATGAACAACATTCTTGGATTTGCGGCAATTGCAACTCTGATATATAAGCAAATCGTGAGAACCATTATGAGAAATTCATGTTTCGTTTTATTCATTCTTTTTGCAATAGTGATTGTGGTTGAAGGGCGTCGTCTGAACTCCAGAACTTTTCATAATGGATTGGTTTCAGATGGAGCTTACGATGATGATGAACTTCAGCATAACAAAACTTCTTACTTACTTTTGAAAGGCATTGAATCTGAACCCTATTCTCCAGAAGAGTGCAAGCAAATGTATGGGTTCTTGCCTTGTTCAAATAATATTTTTGGCCACCTGTTTCTGATTTTGGTTTATGAGTACTTGTTGTTCCATGGAGAATCGTATTTGGTTGATGGAGGTGAGCAGATCTTCAAGATTCTTGGTCCTGGGATTTTCGGTGCAAGTGCCTTTCACATCCTTAGTGCCCTTCTTGAGTCCTTAATTCTTCTTGTTTCTGGACTTCTCAGCAGTAAGGAGATTGCACAAGAGTACGCTTTTACTGGAGTTGGTTTATTAGCTGGATCATCCATCTTGCTCTTGACAGTAGTTTGGGGAACCTGTATTATAACTGGGGCCCAACAATTTAACAATTATTCAAGTCCTAGAATCTGTAATGGTTCTAATTCAGTAACTACAAAACTAAAATTATACTTGACTGGTTATGGCATTACGACAGATTTGGAGACCAGCTACACTGCAAGAATCATGCTTGTCTCTGTCATACCACTCATGATAGTGCAAATACCTAACTTATTTCAATTCTCGTCTGGGCCAAGAACTGTGACTTTGATAATTGCTCTTATCATCACTGCCATTTTTCTGCTCTTGTACTTCACTTACCAGATTTTTGAACCTTGGGTACAGAAAAGAAGATTGGAATATGTGAAAAGAAATCATTTACTAGTAAGAATATTACGGCATGTTGAGAAGAGTACCCTGGAGAGGATCCTCACCAAGAATGGATCTCCAAATAAAAGTGCCATAAGAAGGCCATTTAGAGAAGTGGATCAAAATGAAGACAGTGTTTTATCAGCTTTTGAAGTAAAGCGGATCCTGCATAAGAGCAAATCCAGTGAAAGAAGTATCAGTGAAGAGGAAATAGAAGACATGTTAAGAATTTTTAACTTGGATGATGATGAAAATAGAATAACTAAAGATGAATTTGTGAGTGGCTTTATAAAATGGCTTGAACAAGCCAAGTTTGCTATGAATAAACAGTATATGTCAAGGAAATCCCTCAAGGAGTTATATCAGGTTTTTGAGCCATGGATTGAGAACAAAAGGAGAGAACAAGAAACAAAGCAACATATCATATCTGAAATCTTTAGGCGTATTCAGAGCGATTTGGTTGTCAACCTTGTCACTGAAGATGGCAAACCTGATGAACTTGCTATCAGAAGGTTATTCGACAAGACGGATACCAATAAAGATAACTGCATTTCCCGGTCTGAGTTAAGAAAACTACTCAAGGAGATCAATATTGCTAAAGCATCCATAGATGTGGAGGAAGCAGCTAATAAATTCATTGAAGAACTTGACGTTAACAGAGACCTTGTCATTAGTGAGGAGGAATTTATTTCTGGGCTCAAAAAATGGCTCAGCTCATCATCTTCCAGTTCTGCTCTTGTCTCAGGCTCTGAGTCTGAAGAAGACACACTTCAGATGTGGGAAGAGACAGACATGGTGGTGGAAGAGAATCAAAGCAAAGCAGTGGTTGATAAATCGGTGTGGGCATGGGTGAAGGCAATAATATATGTGTTGGTGGGGATTGCTATGTTATCTGTTCTTGCAGAGCCATTGATAGAAAGTGTACGCAGGTTTTCAAACAGTGCAGGAATTAATGCATTCTTTATCTCATTTATGTTGGTCCCATTGGCTACAAATGCTAAAAAGGCAATTTCTGCGGTCAAGGAAGCAAGCCATAAGAAGTCCAGAACTACTTCTCTTTCCATTTCTGAGATGTATGGAGGGGTATTCATGAACAATGTGCTAGGGTTCTTTGCTATTTCAGTTCTGATATGTGCTAGAGGAATCACATGGGAATTCTCAGCTGAAGCACTGGTTGTCGCTCTGGTTTGTCTTCTGGCTGGCCTTTCTGCTAGTTTTAATTCCACTTTTCCTGTATGGTATTCCTTATGTGCATACCTCTTGTATCCACTCTCTCTTGTCCTGGTTTTTCTCCTCAAACATGTTCTCAGCTATATTTAA 4167 0.3962 MRNISKPACFIFILLLVAVLEVEGRYLQTRTSALLTSDGVDEEDGVQPQKNPHLFLRGDTRKTEHFEDKCEQMYGFLPCSTNTFGHLFLILVYEFLLFHGESYLASGGEQIFKILGPGLFGASAFDLLCALPESLILLVTGLSTETKEGAQEYASTGVGILAGSSILLLTIVWGTCVITGRQNLKTDSSRPKSSHCSNSSSSTPKELLVGSGITMDKETKEMARIMVLSVIPLIIMQIPSVFRFSSVLRSVTLMIALTVTVIFVLSYFIYQIFKPHIEKTRLEYIKHHDLILRIFDHVEKQTLQKILTEDGSPNVAAINGLYNEISSQHGGERNLSASEMKELLLKNKLTGTNISEEQVEAMLRVFDINGDQIITKEEFVNGLTQWLEQTKHALDKQYIPRKSLQNIYQGFLKPWMEHMRKEREMKGHLVSEILRHAQSDTVVRQLLHDDGTADESAIRRLFEEVDGNRDNCVSQSELRKLVANMHFGEGVNEEEAVKKIIQDFDINSDNVITKEEFVDGITKWVLSSSRQSPHSKPLHHEEENHQTWEYVEKVVEEKHQHKGIHGWTMAIINVVLGITILSILAEPLVDSVQAFSAEAGIPSFFASFILVPLATNFREATSAIKEASHKKKSNTSHAIYEIYGAVFMNNILGFAAIATLIYKQIVRTIMRNSCFVLFILFAIVIVVEGRRLNSRTFHNGLVSDGAYDDDELQHNKTSYLLLKGIESEPYSPEECKQMYGFLPCSNNIFGHLFLILVYEYLLFHGESYLVDGGEQIFKILGPGIFGASAFHILSALLESLILLVSGLLSSKEIAQEYAFTGVGLLAGSSILLLTVVWGTCIITGAQQFNNYSSPRICNGSNSVTTKLKLYLTGYGITTDLETSYTARIMLVSVIPLMIVQIPNLFQFSSGPRTVTLIIALIITAIFLLLYFTYQIFEPWVQKRRLEYVKRNHLLVRILRHVEKSTLERILTKNGSPNKSAIRRPFREVDQNEDSVLSAFEVKRILHKSKSSERSISEEEIEDMLRIFNLDDDENRITKDEFVSGFIKWLEQAKFAMNKQYMSRKSLKELYQVFEPWIENKRREQETKQHIISEIFRRIQSDLVVNLVTEDGKPDELAIRRLFDKTDTNKDNCISRSELRKLLKEINIAKASIDVEEAANKFIEELDVNRDLVISEEEFISGLKKWLSSSSSSSALVSGSESEEDTLQMWEETDMVVEENQSKAVVDKSVWAWVKAIIYVLVGIAMLSVLAEPLIESVRRFSNSAGINAFFISFMLVPLATNAKKAISAVKEASHKKSRTTSLSISEMYGGVFMNNVLGFFAISVLICARGITWEFSAEALVVALVCLLAGLSASFNSTFPVWYSLCAYLLYPLSLVLVFLLKHVLSYI 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele12g0693 1388 Gene3D - 1045 1194 - -
Lele12g0693 1388 ProSiteProfiles EF-hand calcium-binding domain profile. 1113 1148 IPR002048 GO:0005509
Lele12g0693 1388 CDD EFh 335 384 IPR002048 GO:0005509
Lele12g0693 1388 Pfam EF-hand domain pair 339 383 IPR002048 GO:0005509
Lele12g0693 1388 Pfam EF-hand domain pair 1117 1180 IPR002048 GO:0005509
Lele12g0693 1388 Pfam EF-hand domain pair 456 519 IPR002048 GO:0005509
Lele12g0693 1388 ProSiteProfiles EF-hand calcium-binding domain profile. 976 1011 IPR002048 GO:0005509
Lele12g0693 1388 ProSitePatterns EF-hand calcium-binding domain. 1126 1138 IPR018247 -
Lele12g0693 1388 Coils Coil 1138 1158 - -
Lele12g0693 1388 SUPERFAMILY EF-hand 980 1188 IPR011992 -
Lele12g0693 1388 ProSiteProfiles EF-hand calcium-binding domain profile. 492 527 IPR002048 GO:0005509
Lele12g0693 1388 MobiDBLite consensus disorder prediction 184 207 - -
Lele12g0693 1388 CDD EFh 1118 1183 IPR002048 GO:0005509
Lele12g0693 1388 ProSiteProfiles EF-hand calcium-binding domain profile. 1153 1188 IPR002048 GO:0005509
Lele12g0693 1388 ProSiteProfiles EF-hand calcium-binding domain profile. 354 389 IPR002048 GO:0005509
Lele12g0693 1388 Pfam Sodium/calcium exchanger protein 573 687 IPR004837 GO:0016020|GO:0055085
Lele12g0693 1388 Pfam Sodium/calcium exchanger protein 1236 1379 IPR004837 GO:0016020|GO:0055085
Lele12g0693 1388 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 738 1380 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lele12g0693 1388 Gene3D - 390 536 - -
Lele12g0693 1388 SUPERFAMILY EF-hand 335 526 IPR011992 -
Lele12g0693 1388 Gene3D - 955 1044 - -
Lele12g0693 1388 ProSiteProfiles EF-hand calcium-binding domain profile. 453 488 IPR002048 GO:0005509
Lele12g0693 1388 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Lele12g0693 1388 ProSitePatterns EF-hand calcium-binding domain. 466 478 IPR018247 -
Lele12g0693 1388 ProSitePatterns EF-hand calcium-binding domain. 367 379 IPR018247 -
Lele12g0693 1388 Gene3D - 312 389 - -
Lele12g0693 1388 CDD EFh 458 522 IPR002048 GO:0005509
Lele12g0693 1388 SMART efh_1 358 386 IPR002048 GO:0005509
Lele12g0693 1388 SMART efh_1 496 524 IPR002048 GO:0005509
Lele12g0693 1388 SMART efh_1 980 1008 IPR002048 GO:0005509
Lele12g0693 1388 SMART efh_1 457 485 IPR002048 GO:0005509
Lele12g0693 1388 SMART efh_1 1157 1185 IPR002048 GO:0005509
Lele12g0693 1388 SMART efh_1 1117 1145 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele12g0693 Lele-ChrLele12 15130852 15141539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele12g0693 407 696 EF-hand Containing Proteins AT1G53210 36.538 1.29e-38 151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0641 11 6209384 6213161 Lele12g0693 12 15130852 15141539 ECH
Lele12g0693 12 15130852 15141539 Lele12g0693 12 15130852 15141539 ECH
Lele09g0630 09 4813759 4817702 Lele12g0693 12 15130852 15141539 hybridization